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Mutant Information

Mutant Name	FN_826-4-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_826-4-1 Alignment File
Seed Availability	No
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28124056	G-A	HET
SBS	Chr1	21708757	G-A	Homo
SBS	Chr1	21708760	G-C	Homo
SBS	Chr10	12649085	C-T	HET
SBS	Chr10	19154101	G-A	HET
SBS	Chr12	8713394	G-T	HET
SBS	Chr12	14993100	C-A	HET
SBS	Chr12	27207326	C-A	Homo
SBS	Chr2	30442271	C-T	HET
SBS	Chr2	2924658	G-A	Homo		LOC_Os02g05890
SBS	Chr2	7950271	A-G	Homo
SBS	Chr2	22128034	C-A	Homo
SBS	Chr3	27054328	T-A	Homo
SBS	Chr3	33759711	C-A	Homo
SBS	Chr4	19950274	G-T	Homo
SBS	Chr5	28141946	G-T	Homo
SBS	Chr6	13338408	C-T	Homo
SBS	Chr7	19591261	T-C	HET

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1118471	1118472	1
Deletion	Chr4	3105930	3105932	2	LOC_Os04g06000
Deletion	Chr3	3665214	3665215	1
Deletion	Chr11	3675622	3675631	9
Deletion	Chr6	4306910	4306925	15
Deletion	Chr11	5800653	5800654	1
Deletion	Chr8	6667975	6667981	6
Deletion	Chr3	7069866	7069890	24	LOC_Os03g13080
Deletion	Chr10	9670506	9670513	7
Deletion	Chr3	11214096	11214100	4	LOC_Os03g19930
Deletion	Chr4	14263621	14263622	1
Deletion	Chr9	17294222	17454746	160524	30
Deletion	Chr4	23251206	23251225	19
Deletion	Chr7	23415765	23415788	23	LOC_Os07g39060
Deletion	Chr11	23494836	23494849	13
Deletion	Chr1	30675017	30675018	1
Deletion	Chr1	32988319	32988324	5
Deletion	Chr3	36334188	36334189	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	19648411	19648411	1
Insertion	Chr4	2305618	2305618	1
Insertion	Chr7	4672061	4672061	1

No Inversion

No Translocation