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| Mutant Information |
|---|
| Mutant Name | FN_829-2-5 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_829-2-5 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13397993 | G-T | Homo | ||
| SBS | Chr1 | 16315743 | T-G | Homo | ||
| SBS | Chr1 | 19254725 | T-C | HET | ||
| SBS | Chr1 | 19535223 | G-A | HET | ||
| SBS | Chr1 | 22213372 | C-G | HET | LOC_Os01g39420 | |
| SBS | Chr1 | 24186291 | C-T | HET | ||
| SBS | Chr1 | 42577609 | G-A | HET | ||
| SBS | Chr1 | 4958488 | G-T | HET | ||
| SBS | Chr10 | 11070579 | G-C | HET | ||
| SBS | Chr10 | 14160867 | G-T | HET | ||
| SBS | Chr10 | 16817823 | C-T | HET | ||
| SBS | Chr10 | 224437 | G-T | HET | ||
| SBS | Chr10 | 8047081 | A-T | Homo | LOC_Os10g15220 | |
| SBS | Chr12 | 2183457 | C-T | HET | ||
| SBS | Chr12 | 25297188 | C-T | HET | ||
| SBS | Chr2 | 5423987 | T-C | Homo | ||
| SBS | Chr2 | 6807487 | G-A | Homo | ||
| SBS | Chr3 | 18523120 | G-T | Homo | LOC_Os03g32380 | |
| SBS | Chr3 | 21008603 | G-A | Homo | ||
| SBS | Chr3 | 3735438 | G-A | Homo | ||
| SBS | Chr4 | 16547071 | A-C | Homo | ||
| SBS | Chr4 | 20988814 | T-A | Homo | ||
| SBS | Chr4 | 3053044 | G-T | HET | ||
| SBS | Chr4 | 32300779 | G-C | HET | ||
| SBS | Chr4 | 3264755 | G-A | HET | ||
| SBS | Chr5 | 24491243 | C-T | Homo | ||
| SBS | Chr5 | 28717903 | G-C | HET | ||
| SBS | Chr5 | 7198187 | A-G | HET | ||
| SBS | Chr6 | 24417101 | G-A | Homo | ||
| SBS | Chr6 | 29505563 | G-A | HET | ||
| SBS | Chr7 | 19530605 | G-A | HET | ||
| SBS | Chr8 | 16667029 | G-A | Homo | ||
| SBS | Chr8 | 4736363 | C-T | HET | ||
| SBS | Chr8 | 5040957 | G-C | Homo | ||
| SBS | Chr9 | 14818342 | C-T | Homo | ||
| SBS | Chr9 | 8395984 | G-A | Homo |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 6740504 | 6740507 | 3 | |
| Deletion | Chr5 | 10401821 | 10401822 | 1 | |
| Deletion | Chr6 | 15153470 | 15153471 | 1 | |
| Deletion | Chr7 | 15303838 | 15303839 | 1 | |
| Deletion | Chr6 | 16605366 | 16605380 | 14 | |
| Deletion | Chr9 | 17711843 | 17711845 | 2 | |
| Deletion | Chr2 | 19706203 | 19706204 | 1 | |
| Deletion | Chr5 | 20148732 | 20148735 | 3 | |
| Deletion | Chr3 | 21869762 | 21869771 | 9 | LOC_Os03g39350 |
| Deletion | Chr7 | 22809401 | 22864801 | 55400 | 9 |
| Deletion | Chr3 | 24123157 | 24123202 | 45 | LOC_Os03g43270 |
| Deletion | Chr1 | 25668386 | 25668390 | 4 | |
| Deletion | Chr1 | 25668388 | 25668390 | 2 | |
| Deletion | Chr12 | 26454500 | 26454501 | 1 | |
| Deletion | Chr7 | 28084072 | 28084079 | 7 | |
| Deletion | Chr6 | 29232454 | 29232455 | 1 | LOC_Os06g48330 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 42077561 | 42077561 | 1 | |
| Insertion | Chr10 | 10703197 | 10703197 | 1 | |
| Insertion | Chr8 | 20836443 | 20836444 | 2 |
No Inversion
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr1 | 28060062 | Chr2 | 30221069 | 2 |