Search Results
| Mutant Information |
|---|
| Mutant Name | FN_830-6-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_830-6-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 5819841 | G-A | HET | ||
| SBS | Chr1 | 14146921 | C-A | Homo | ||
| SBS | Chr1 | 18397057 | T-C | Homo | LOC_Os01g33420 | |
| SBS | Chr10 | 3652586 | T-C | Homo | ||
| SBS | Chr10 | 5228481 | T-A | Homo | ||
| SBS | Chr10 | 22905633 | G-T | Homo | ||
| SBS | Chr11 | 19282593 | G-A | HET | ||
| SBS | Chr11 | 19888642 | G-C | HET | ||
| SBS | Chr11 | 21279255 | A-T | HET | ||
| SBS | Chr12 | 27446979 | G-A | HET | LOC_Os12g44280 | |
| SBS | Chr12 | 18396671 | T-G | Homo | ||
| SBS | Chr2 | 17276833 | G-A | HET | ||
| SBS | Chr2 | 17276836 | G-A | HET | ||
| SBS | Chr2 | 20675898 | G-A | HET | ||
| SBS | Chr2 | 28664055 | C-G | Homo | ||
| SBS | Chr3 | 19838254 | C-T | HET | ||
| SBS | Chr3 | 9420413 | A-G | Homo | ||
| SBS | Chr3 | 10036043 | G-A | Homo | ||
| SBS | Chr3 | 34055026 | G-A | Homo | ||
| SBS | Chr4 | 20635271 | G-A | Homo | ||
| SBS | Chr6 | 14635249 | G-A | HET | ||
| SBS | Chr6 | 10146362 | C-T | Homo | ||
| SBS | Chr6 | 13126571 | C-G | Homo | ||
| SBS | Chr7 | 14005594 | G-A | HET | ||
| SBS | Chr7 | 17463389 | A-G | Homo | ||
| SBS | Chr7 | 26760017 | G-A | Homo | ||
| SBS | Chr8 | 5136325 | T-A | HET | ||
| SBS | Chr8 | 9643852 | T-A | HET |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 73275 | 73279 | 4 | |
| Deletion | Chr7 | 209550 | 209551 | 1 | |
| Deletion | Chr9 | 751884 | 751909 | 25 | LOC_Os09g02060 |
| Deletion | Chr9 | 4928072 | 4928085 | 13 | |
| Deletion | Chr6 | 6555719 | 6555720 | 1 | |
| Deletion | Chr11 | 12973539 | 12973555 | 16 | |
| Deletion | Chr11 | 13999787 | 13999791 | 4 | |
| Deletion | Chr9 | 14766720 | 14766727 | 7 | |
| Deletion | Chr11 | 17160786 | 17160818 | 32 | |
| Deletion | Chr1 | 19162468 | 19162470 | 2 | LOC_Os01g34730 |
| Deletion | Chr1 | 19311822 | 19311841 | 19 | |
| Deletion | Chr11 | 21766058 | 21766059 | 1 | |
| Deletion | Chr3 | 22007691 | 22007702 | 11 | |
| Deletion | Chr3 | 22641766 | 22641768 | 2 | LOC_Os03g40720 |
| Deletion | Chr11 | 26804889 | 26804905 | 16 | |
| Deletion | Chr2 | 29144123 | 29144138 | 15 | |
| Deletion | Chr1 | 33967390 | 33967391 | 1 | |
| Deletion | Chr1 | 41093508 | 41093511 | 3 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 7425690 | 7425690 | 1 | |
| Insertion | Chr4 | 16656028 | 16656028 | 1 | |
| Insertion | Chr5 | 12323928 | 12323928 | 1 | |
| Insertion | Chr6 | 30162951 | 30162952 | 2 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 26919197 | 26919530 | LOC_Os08g42590 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 15326411 | Chr1 | 414455 | LOC_Os01g01780 |
Tandem duplications: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Tandem Duplication | Chr7 | 29690693 | 29692170 | 1477 |