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| Mutant Information |
|---|
| Mutant Name | FN_831-4-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_831-4-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 20626373 | G-A | Homo | ||
| SBS | Chr11 | 7485042 | C-T | HET | ||
| SBS | Chr12 | 13182964 | G-A | HET | ||
| SBS | Chr12 | 13182965 | C-A | HET | ||
| SBS | Chr12 | 1746553 | G-T | HET | ||
| SBS | Chr12 | 21395444 | A-T | Homo | ||
| SBS | Chr12 | 21395445 | A-T | Homo | ||
| SBS | Chr12 | 7865309 | T-G | HET | ||
| SBS | Chr2 | 20476035 | C-T | HET | ||
| SBS | Chr2 | 26304188 | T-G | HET | ||
| SBS | Chr4 | 11727264 | C-G | Homo | ||
| SBS | Chr4 | 9858129 | C-T | Homo | ||
| SBS | Chr5 | 24771836 | G-T | HET | ||
| SBS | Chr6 | 14704472 | G-A | Homo | ||
| SBS | Chr6 | 24440850 | T-A | HET | ||
| SBS | Chr7 | 2325677 | C-T | Homo | ||
| SBS | Chr8 | 14949101 | C-A | HET | ||
| SBS | Chr8 | 18195766 | A-G | HET | ||
| SBS | Chr8 | 20128193 | G-A | Homo | LOC_Os08g32490 | |
| SBS | Chr8 | 25215807 | C-T | HET | ||
| SBS | Chr8 | 3680077 | C-T | Homo | ||
| SBS | Chr8 | 8807498 | C-T | Homo | ||
| SBS | Chr9 | 17839782 | A-G | HET |
Deletions: 23
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 2444152 | 2444282 | 130 | |
| Deletion | Chr1 | 3536417 | 3540786 | 4369 | LOC_Os01g07460 |
| Deletion | Chr6 | 4185348 | 4185349 | 1 | |
| Deletion | Chr5 | 10494149 | 10494159 | 10 | |
| Deletion | Chr5 | 12681046 | 12681052 | 6 | LOC_Os05g22370 |
| Deletion | Chr1 | 13337235 | 13337252 | 17 | |
| Deletion | Chr10 | 14526515 | 14526516 | 1 | |
| Deletion | Chr4 | 15976893 | 15976895 | 2 | |
| Deletion | Chr8 | 18476415 | 18893775 | 417360 | 55 |
| Deletion | Chr2 | 19918658 | 19918665 | 7 | |
| Deletion | Chr8 | 21382682 | 21382693 | 11 | |
| Deletion | Chr12 | 21395260 | 21395266 | 6 | |
| Deletion | Chr4 | 21939489 | 21939507 | 18 | |
| Deletion | Chr11 | 23287668 | 23287669 | 1 | |
| Deletion | Chr4 | 24680853 | 24680854 | 1 | |
| Deletion | Chr4 | 25531597 | 25531602 | 5 | |
| Deletion | Chr4 | 25531598 | 25531646 | 48 | |
| Deletion | Chr4 | 25531627 | 25531646 | 19 | |
| Deletion | Chr7 | 25980901 | 25985001 | 4100 | LOC_Os07g43390 |
| Deletion | Chr1 | 28987158 | 28987160 | 2 | |
| Deletion | Chr1 | 29807604 | 29807610 | 6 | |
| Deletion | Chr2 | 31761028 | 31761050 | 22 | |
| Deletion | Chr1 | 39122834 | 39122835 | 1 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr6 | 18062595 | 18062595 | 1 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 6345573 | 6453006 | 2 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 2071084 | Chr1 | 14170329 | LOC_Os12g04830 |
| Translocation | Chr1 | 14158300 | Chr12 | 2946342 | |
| Translocation | Chr12 | 19433606 | Chr8 | 3679976 | LOC_Os08g06490 |
| Translocation | Chr2 | 31408520 | Chr11 | 27478534 | LOC_Os02g51290 |