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| Mutant Information |
|---|
| Mutant Name | FN_846-8-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_846-8-1 Alignment File |
| Seed Availability | No |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 172866 | A-T | HET | LOC_Os01g01350 | |
| SBS | Chr1 | 3724687 | C-T | HET | ||
| SBS | Chr10 | 22631595 | C-G | HET | ||
| SBS | Chr2 | 20185796 | A-C | HET | ||
| SBS | Chr3 | 1840546 | C-T | HET | ||
| SBS | Chr3 | 20765163 | C-A | Homo | ||
| SBS | Chr3 | 24374368 | C-T | Homo | LOC_Os03g43610 | |
| SBS | Chr3 | 4711124 | C-T | HET | ||
| SBS | Chr3 | 6506541 | G-A | Homo | ||
| SBS | Chr4 | 15447608 | C-T | Homo | ||
| SBS | Chr4 | 22286599 | A-G | HET | ||
| SBS | Chr4 | 28944853 | G-A | Homo | ||
| SBS | Chr4 | 33193830 | C-T | HET | ||
| SBS | Chr5 | 1227374 | G-A | HET | LOC_Os05g03100 | |
| SBS | Chr5 | 18237318 | C-T | Homo | ||
| SBS | Chr5 | 18237319 | A-T | Homo | ||
| SBS | Chr5 | 782207 | A-G | HET | ||
| SBS | Chr6 | 22176543 | A-T | HET | ||
| SBS | Chr7 | 14098255 | G-A | HET | ||
| SBS | Chr7 | 23159244 | A-G | Homo | ||
| SBS | Chr7 | 23995263 | T-G | Homo | ||
| SBS | Chr7 | 24982855 | C-A | Homo | ||
| SBS | Chr7 | 4005988 | C-T | Homo | ||
| SBS | Chr8 | 17663255 | G-A | Homo | ||
| SBS | Chr9 | 12636587 | T-A | HET | ||
| SBS | Chr9 | 21313847 | A-T | Homo |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 441722 | 445644 | 3922 | LOC_Os01g01830 |
| Deletion | Chr4 | 3316436 | 3316437 | 1 | |
| Deletion | Chr12 | 4500230 | 4500232 | 2 | |
| Deletion | Chr6 | 9686694 | 9686707 | 13 | |
| Deletion | Chr2 | 10881264 | 10881268 | 4 | |
| Deletion | Chr12 | 11208406 | 11208408 | 2 | |
| Deletion | Chr3 | 13991869 | 13991870 | 1 | |
| Deletion | Chr1 | 14248601 | 14248602 | 1 | |
| Deletion | Chr8 | 14392693 | 14392695 | 2 | |
| Deletion | Chr6 | 16607827 | 16607842 | 15 | |
| Deletion | Chr4 | 18826408 | 18826410 | 2 | LOC_Os04g31470 |
| Deletion | Chr2 | 20716623 | 20718150 | 1527 | |
| Deletion | Chr5 | 21073837 | 21073838 | 1 | |
| Deletion | Chr1 | 25909622 | 25909623 | 1 | |
| Deletion | Chr6 | 27958688 | 27958699 | 11 | |
| Deletion | Chr3 | 33472213 | 33472219 | 6 | |
| Deletion | Chr1 | 36943269 | 36943270 | 1 | LOC_Os01g63690 |
| Deletion | Chr1 | 37351360 | 37351361 | 1 | |
| Deletion | Chr1 | 42448395 | 42448403 | 8 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 11267894 | 11267897 | 4 | |
| Insertion | Chr11 | 12931853 | 12931852 | 0 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 18932632 | 19652694 | LOC_Os12g32560 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 17839399 | Chr5 | 19192283 | |
| Translocation | Chr2 | 20145461 | Chr1 | 24132938 | |
| Translocation | Chr1 | 23939927 | Chr5 | 17502652 | 2 |