Search Results
| Mutant Information |
|---|
| Mutant Name | FN_935-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_935-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 22946962 | C-T | Homo | ||
| SBS | Chr1 | 16010802 | G-A | Homo | ||
| SBS | Chr1 | 16072113 | A-G | Homo | ||
| SBS | Chr1 | 22960467 | A-C | Homo | ||
| SBS | Chr1 | 22960479 | G-A | Homo | ||
| SBS | Chr1 | 26052799 | T-C | Homo | ||
| SBS | Chr1 | 36245342 | C-A | Homo | ||
| SBS | Chr10 | 15761109 | G-T | Homo | ||
| SBS | Chr10 | 16547558 | T-C | Homo | ||
| SBS | Chr11 | 11429095 | G-A | HET | ||
| SBS | Chr11 | 14480752 | G-A | HET | ||
| SBS | Chr11 | 27759452 | C-T | Homo | ||
| SBS | Chr2 | 10199560 | T-A | Homo | ||
| SBS | Chr2 | 21566355 | G-A | Homo | LOC_Os02g35900 | |
| SBS | Chr3 | 7660316 | T-G | HET | ||
| SBS | Chr4 | 6654605 | G-A | HET | LOC_Os04g12090 | |
| SBS | Chr4 | 15325223 | C-A | HET | LOC_Os04g26290 | |
| SBS | Chr4 | 1605980 | G-A | Homo | ||
| SBS | Chr5 | 20369899 | T-A | HET | ||
| SBS | Chr5 | 13797004 | T-C | Homo | LOC_Os05g23960 | |
| SBS | Chr6 | 13571533 | A-G | HET | ||
| SBS | Chr6 | 14114049 | A-G | HET | ||
| SBS | Chr6 | 20211010 | G-A | HET | ||
| SBS | Chr6 | 3198091 | A-G | Homo | ||
| SBS | Chr8 | 5579517 | C-G | Homo | ||
| SBS | Chr8 | 23851284 | G-A | Homo | ||
| SBS | Chr9 | 4342344 | G-A | HET | ||
| SBS | Chr9 | 14167450 | G-C | HET | ||
| SBS | Chr9 | 17254189 | A-T | HET | LOC_Os09g28390 |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 257124 | 257127 | 3 | |
| Deletion | Chr1 | 1321041 | 1321052 | 11 | |
| Deletion | Chr12 | 1530913 | 1530941 | 28 | |
| Deletion | Chr6 | 3170301 | 3198101 | 27800 | 3 |
| Deletion | Chr9 | 3877041 | 3877044 | 3 | LOC_Os09g07680 |
| Deletion | Chr1 | 4369649 | 4369651 | 2 | |
| Deletion | Chr5 | 4875711 | 4875734 | 23 | |
| Deletion | Chr5 | 6654648 | 6654654 | 6 | |
| Deletion | Chr7 | 7008701 | 7070001 | 61300 | 4 |
| Deletion | Chr10 | 14318401 | 14318406 | 5 | |
| Deletion | Chr6 | 14367433 | 14367435 | 2 | |
| Deletion | Chr3 | 18280141 | 18295938 | 15797 | 5 |
| Deletion | Chr12 | 20803848 | 20803850 | 2 | LOC_Os12g34320 |
| Deletion | Chr5 | 25318619 | 25318631 | 12 | |
| Deletion | Chr12 | 25630446 | 25630504 | 58 | |
| Deletion | Chr4 | 26918730 | 26918750 | 20 | LOC_Os04g45490 |
| Deletion | Chr2 | 28440643 | 28440644 | 1 | |
| Deletion | Chr2 | 29279264 | 29279280 | 16 | |
| Deletion | Chr5 | 29753449 | 29753450 | 1 |
Insertions: 5
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 13132406 | 13653139 | |
| Inversion | Chr11 | 15655856 | 15912645 | LOC_Os11g27170 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 15911123 | Chr9 | 13132399 | LOC_Os11g27630 |
| Translocation | Chr11 | 15912633 | Chr9 | 13653133 |