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| Mutant Information |
|---|
| Mutant Name | FN_949-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_949-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 27373550 | A-G | Homo | ||
| SBS | Chr1 | 32876084 | C-T | HET | ||
| SBS | Chr1 | 32876085 | C-T | HET | ||
| SBS | Chr1 | 33985176 | C-A | HET | ||
| SBS | Chr1 | 37244512 | C-T | HET | ||
| SBS | Chr10 | 21306352 | G-A | Homo | ||
| SBS | Chr10 | 5172562 | G-A | HET | ||
| SBS | Chr12 | 14232524 | C-T | HET | ||
| SBS | Chr12 | 2943421 | C-T | HET | ||
| SBS | Chr12 | 3654214 | C-G | HET | ||
| SBS | Chr12 | 5506967 | G-A | HET | ||
| SBS | Chr12 | 9111904 | G-A | HET | ||
| SBS | Chr2 | 1747517 | A-G | Homo | ||
| SBS | Chr2 | 18403229 | G-T | HET | ||
| SBS | Chr2 | 18491944 | A-T | Homo | ||
| SBS | Chr2 | 35385190 | C-T | Homo | ||
| SBS | Chr3 | 31447239 | C-T | HET | ||
| SBS | Chr3 | 5024961 | G-A | Homo | ||
| SBS | Chr4 | 1500985 | C-T | HET | LOC_Os04g03470 | |
| SBS | Chr4 | 23861068 | A-T | Homo | LOC_Os04g40070 | |
| SBS | Chr4 | 27402153 | C-T | Homo | ||
| SBS | Chr4 | 8133883 | C-T | HET | ||
| SBS | Chr5 | 11321037 | A-C | Homo | ||
| SBS | Chr5 | 15955750 | G-C | HET | ||
| SBS | Chr5 | 3290220 | G-A | Homo | ||
| SBS | Chr6 | 16876245 | T-G | Homo | ||
| SBS | Chr6 | 2519912 | A-G | HET | ||
| SBS | Chr6 | 25583917 | A-T | Homo | ||
| SBS | Chr6 | 5091847 | T-C | Homo | ||
| SBS | Chr7 | 19516517 | A-T | Homo | ||
| SBS | Chr7 | 4905822 | G-C | Homo | ||
| SBS | Chr7 | 6851593 | A-T | Homo | ||
| SBS | Chr8 | 3468961 | T-C | Homo | ||
| SBS | Chr9 | 16771863 | C-A | Homo | ||
| SBS | Chr9 | 16771864 | A-T | Homo |
Deletions: 22
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 2481301 | 2661601 | 180300 | 27 |
| Deletion | Chr7 | 3366976 | 3366981 | 5 | |
| Deletion | Chr11 | 3925222 | 3925231 | 9 | |
| Deletion | Chr9 | 4091973 | 4091978 | 5 | LOC_Os09g07960 |
| Deletion | Chr5 | 7720369 | 7720382 | 13 | |
| Deletion | Chr4 | 8076844 | 8076847 | 3 | |
| Deletion | Chr2 | 9011223 | 9011236 | 13 | |
| Deletion | Chr5 | 12629603 | 12629604 | 1 | LOC_Os05g22314 |
| Deletion | Chr11 | 12681964 | 12681979 | 15 | |
| Deletion | Chr3 | 15241613 | 15241614 | 1 | LOC_Os03g26690 |
| Deletion | Chr8 | 15346415 | 15346416 | 1 | |
| Deletion | Chr5 | 16340400 | 16340401 | 1 | |
| Deletion | Chr3 | 18621553 | 18621558 | 5 | |
| Deletion | Chr2 | 19141340 | 19141341 | 1 | |
| Deletion | Chr2 | 21007255 | 21037218 | 29963 | 3 |
| Deletion | Chr8 | 22052397 | 22052398 | 1 | |
| Deletion | Chr8 | 22256601 | 22556101 | 299500 | 49 |
| Deletion | Chr12 | 22645874 | 22645875 | 1 | |
| Deletion | Chr12 | 24972614 | 24972615 | 1 | |
| Deletion | Chr6 | 25796401 | 25798701 | 2300 | |
| Deletion | Chr2 | 31112110 | 31112111 | 1 | |
| Deletion | Chr2 | 33332902 | 33332907 | 5 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 9888544 | 9888544 | 1 | |
| Insertion | Chr7 | 8292303 | 8292303 | 1 |
No Inversion
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr1 | 6599435 | Chr10 | 4721659 | LOC_Os10g08702 |