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| Mutant Information |
|---|
| Mutant Name | FN_955-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_955-1 Alignment File |
| Seed Availability | No |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12761809 | T-C | Homo | ||
| SBS | Chr1 | 25347502 | T-A | Homo | ||
| SBS | Chr1 | 28095850 | G-A | Homo | ||
| SBS | Chr1 | 33933759 | A-T | HET | ||
| SBS | Chr10 | 18879699 | G-A | HET | ||
| SBS | Chr10 | 19830901 | T-C | HET | ||
| SBS | Chr10 | 19830902 | G-A | HET | ||
| SBS | Chr10 | 7320499 | G-C | Homo | LOC_Os10g13530 | |
| SBS | Chr10 | 8529189 | G-A | Homo | ||
| SBS | Chr11 | 16880125 | G-A | Homo | ||
| SBS | Chr12 | 10899614 | A-C | Homo | ||
| SBS | Chr12 | 15489492 | C-T | HET | ||
| SBS | Chr12 | 19221222 | C-A | Homo | ||
| SBS | Chr4 | 10616333 | G-T | Homo | ||
| SBS | Chr4 | 28383839 | C-A | HET | LOC_Os04g47830 | |
| SBS | Chr4 | 5899567 | A-C | HET | LOC_Os04g10880 | |
| SBS | Chr5 | 10255493 | T-A | Homo | LOC_Os05g17830 | |
| SBS | Chr5 | 5581760 | C-A | Homo | LOC_Os05g10260 | |
| SBS | Chr5 | 7014848 | A-G | Homo | ||
| SBS | Chr6 | 12434563 | C-T | Homo | ||
| SBS | Chr6 | 17232525 | G-A | Homo | ||
| SBS | Chr6 | 17364138 | G-A | Homo | ||
| SBS | Chr6 | 5379354 | A-G | Homo | ||
| SBS | Chr6 | 5888267 | T-A | Homo | ||
| SBS | Chr7 | 21940486 | G-A | Homo | ||
| SBS | Chr8 | 23497459 | C-T | Homo | ||
| SBS | Chr8 | 25701500 | G-A | HET | LOC_Os08g40600 | |
| SBS | Chr8 | 27837911 | A-G | HET | LOC_Os08g44220 | |
| SBS | Chr8 | 27837912 | G-T | HET | LOC_Os08g44220 | |
| SBS | Chr9 | 20691255 | T-G | HET | ||
| SBS | Chr9 | 20875552 | G-A | HET | ||
| SBS | Chr9 | 8365839 | C-T | Homo | LOC_Os09g14120 |
Deletions: 26
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 456530 | 456544 | 14 | |
| Deletion | Chr7 | 823863 | 823864 | 1 | |
| Deletion | Chr4 | 4449771 | 4449783 | 12 | |
| Deletion | Chr12 | 5163853 | 5163859 | 6 | |
| Deletion | Chr11 | 5785664 | 5785665 | 1 | |
| Deletion | Chr5 | 6539473 | 6539474 | 1 | |
| Deletion | Chr6 | 6712802 | 6712832 | 30 | LOC_Os06g12380 |
| Deletion | Chr2 | 9393693 | 9393694 | 1 | |
| Deletion | Chr2 | 9834802 | 9834823 | 21 | |
| Deletion | Chr5 | 11655432 | 11655433 | 1 | |
| Deletion | Chr8 | 12380819 | 12380821 | 2 | |
| Deletion | Chr6 | 13757727 | 13770694 | 12967 | LOC_Os06g23600 |
| Deletion | Chr1 | 14867865 | 14867873 | 8 | LOC_Os01g26224 |
| Deletion | Chr1 | 16260450 | 16260453 | 3 | LOC_Os01g29050 |
| Deletion | Chr2 | 16312453 | 16312454 | 1 | LOC_Os02g27540 |
| Deletion | Chr12 | 16712180 | 16712191 | 11 | |
| Deletion | Chr1 | 17261914 | 17261918 | 4 | |
| Deletion | Chr2 | 18644501 | 18980901 | 336400 | 48 |
| Deletion | Chr3 | 21958779 | 21958782 | 3 | |
| Deletion | Chr3 | 21997569 | 21997575 | 6 | |
| Deletion | Chr12 | 22409055 | 22409056 | 1 | |
| Deletion | Chr12 | 23334206 | 23334207 | 1 | |
| Deletion | Chr8 | 24472228 | 24472235 | 7 | |
| Deletion | Chr1 | 25074592 | 25074598 | 6 | |
| Deletion | Chr1 | 27853427 | 27853441 | 14 | LOC_Os01g48570 |
| Deletion | Chr3 | 32750327 | 32750333 | 6 | LOC_Os03g57430 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 17490566 | 17490566 | 1 | |
| Insertion | Chr11 | 13107266 | 13107266 | 1 | |
| Insertion | Chr5 | 13437957 | 13437957 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 18644527 | 19020292 | LOC_Os02g32190 |
| Inversion | Chr2 | 18980893 | 19020293 | LOC_Os02g32120 |
No Translocation