Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN_N1-116-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_N1-116-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11021002 | A-G | HET | ||
| SBS | Chr1 | 36910778 | C-T | Homo | LOC_Os01g63640 | |
| SBS | Chr10 | 12394635 | G-A | HET | LOC_Os10g24190 | |
| SBS | Chr10 | 13529771 | A-G | Homo | ||
| SBS | Chr10 | 16999656 | A-C | Homo | ||
| SBS | Chr10 | 2441793 | C-T | Homo | ||
| SBS | Chr10 | 6898316 | T-A | HET | ||
| SBS | Chr11 | 13221021 | G-A | HET | ||
| SBS | Chr11 | 19353244 | C-T | Homo | ||
| SBS | Chr11 | 21360636 | C-T | HET | ||
| SBS | Chr12 | 14171782 | T-C | Homo | ||
| SBS | Chr12 | 22283197 | C-A | Homo | ||
| SBS | Chr12 | 23683244 | C-T | Homo | ||
| SBS | Chr12 | 8792838 | C-G | HET | LOC_Os12g15400 | |
| SBS | Chr2 | 13413948 | C-T | Homo | ||
| SBS | Chr3 | 14027488 | G-A | Homo | LOC_Os03g24630 | |
| SBS | Chr4 | 32737832 | A-G | Homo | ||
| SBS | Chr5 | 12675066 | T-C | Homo | ||
| SBS | Chr5 | 19215132 | A-G | HET | ||
| SBS | Chr5 | 27446151 | G-A | HET | ||
| SBS | Chr5 | 4257620 | G-T | Homo | LOC_Os05g07880 | |
| SBS | Chr6 | 14895775 | A-G | Homo | ||
| SBS | Chr6 | 21777483 | T-A | Homo | ||
| SBS | Chr6 | 4580429 | T-G | HET | ||
| SBS | Chr6 | 6223914 | G-A | Homo | ||
| SBS | Chr7 | 21276557 | G-C | Homo | ||
| SBS | Chr7 | 28710271 | A-G | HET | ||
| SBS | Chr8 | 26589403 | G-A | HET | ||
| SBS | Chr9 | 3364302 | T-C | HET | ||
| SBS | Chr9 | 4633375 | T-A | HET |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 1287503 | 1287506 | 3 | |
| Deletion | Chr3 | 4162177 | 4162182 | 5 | |
| Deletion | Chr3 | 4318522 | 4318524 | 2 | |
| Deletion | Chr3 | 4536030 | 4536031 | 1 | |
| Deletion | Chr6 | 7716404 | 7716408 | 4 | |
| Deletion | Chr7 | 8752838 | 8752845 | 7 | |
| Deletion | Chr11 | 9059453 | 9059581 | 128 | |
| Deletion | Chr10 | 12217057 | 12217058 | 1 | |
| Deletion | Chr2 | 14952716 | 14952718 | 2 | |
| Deletion | Chr2 | 17147229 | 17147235 | 6 | |
| Deletion | Chr6 | 17235750 | 17235793 | 43 | LOC_Os06g29930 |
| Deletion | Chr11 | 17659936 | 17671644 | 11708 | 3 |
| Deletion | Chr11 | 21884162 | 21884163 | 1 | |
| Deletion | Chr1 | 29959619 | 29959623 | 4 | |
| Deletion | Chr6 | 31027079 | 31027087 | 8 | LOC_Os06g51260 |
| Deletion | Chr1 | 40995762 | 40995763 | 1 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 9595300 | 9595301 | 2 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 18956901 | 23047853 | LOC_Os07g31884 |
| Inversion | Chr3 | 33661842 | 35438931 | 2 |
| Inversion | Chr3 | 34706675 | 35438934 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 35498559 | Chr9 | 9066464 | LOC_Os09g15030 |