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| Mutant Information |
|---|
| Mutant Name | FN_N1-119-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_N1-119-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12204962 | A-G | Homo | ||
| SBS | Chr1 | 17092960 | C-T | Homo | ||
| SBS | Chr1 | 17092961 | T-G | Homo | ||
| SBS | Chr1 | 21476745 | C-A | Homo | ||
| SBS | Chr1 | 28595451 | A-G | HET | ||
| SBS | Chr1 | 29470694 | A-T | HET | ||
| SBS | Chr1 | 32447917 | T-A | HET | ||
| SBS | Chr1 | 43081393 | C-A | HET | ||
| SBS | Chr10 | 15824395 | T-A | Homo | ||
| SBS | Chr10 | 2284525 | G-T | HET | ||
| SBS | Chr10 | 4776314 | G-C | HET | ||
| SBS | Chr10 | 6996803 | T-A | HET | LOC_Os10g12570 | |
| SBS | Chr11 | 10335318 | G-A | Homo | ||
| SBS | Chr11 | 14479805 | G-T | HET | ||
| SBS | Chr12 | 26503054 | A-G | Homo | ||
| SBS | Chr12 | 6129086 | G-C | Homo | ||
| SBS | Chr2 | 15915570 | A-G | Homo | ||
| SBS | Chr2 | 1730410 | A-G | Homo | ||
| SBS | Chr2 | 21757495 | C-T | HET | ||
| SBS | Chr3 | 16249333 | G-A | Homo | ||
| SBS | Chr3 | 18646797 | T-A | Homo | ||
| SBS | Chr3 | 24462067 | C-T | Homo | ||
| SBS | Chr4 | 12218387 | G-A | HET | ||
| SBS | Chr4 | 17676636 | G-A | HET | ||
| SBS | Chr4 | 6648333 | C-T | HET | ||
| SBS | Chr6 | 11102745 | A-T | HET | ||
| SBS | Chr6 | 24657482 | T-A | HET | ||
| SBS | Chr6 | 27366112 | A-G | HET | ||
| SBS | Chr6 | 29670174 | G-A | HET | ||
| SBS | Chr6 | 30382975 | G-A | HET | ||
| SBS | Chr7 | 9710951 | T-C | HET | LOC_Os07g16560 | |
| SBS | Chr9 | 13874734 | C-T | Homo |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 450757 | 451937 | 1180 | LOC_Os10g01680 |
| Deletion | Chr11 | 5945945 | 5945960 | 15 | |
| Deletion | Chr11 | 10282326 | 10282327 | 1 | LOC_Os11g18240 |
| Deletion | Chr6 | 10960866 | 10960881 | 15 | |
| Deletion | Chr9 | 17739039 | 17739053 | 14 | |
| Deletion | Chr2 | 19089762 | 19114920 | 25158 | 3 |
| Deletion | Chr2 | 21461984 | 21461994 | 10 | |
| Deletion | Chr7 | 22209872 | 22209895 | 23 | |
| Deletion | Chr7 | 24243838 | 24243841 | 3 | |
| Deletion | Chr5 | 24432261 | 24432271 | 10 | |
| Deletion | Chr3 | 24836336 | 24836341 | 5 | |
| Deletion | Chr4 | 25938269 | 25938300 | 31 | |
| Deletion | Chr1 | 28069976 | 28069977 | 1 | |
| Deletion | Chr2 | 28141600 | 28141605 | 5 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 8661087 | 8661087 | 1 | |
| Insertion | Chr2 | 30417181 | 30417181 | 1 | |
| Insertion | Chr7 | 19409200 | 19409201 | 2 |
No Inversion
No Translocation