Search Results
| Mutant Information |
|---|
| Mutant Name | FN_N1-130-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_N1-130-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 41
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 2154875 | C-A | HET | LOC_Os01g04750 | |
| SBS | Chr1 | 2905480 | C-A | HET | ||
| SBS | Chr1 | 2905799 | G-C | HET | ||
| SBS | Chr1 | 3287888 | C-G | HET | ||
| SBS | Chr1 | 15003620 | A-G | HET | ||
| SBS | Chr1 | 20844772 | T-A | HET | ||
| SBS | Chr1 | 37721998 | C-T | Homo | ||
| SBS | Chr11 | 10644684 | G-T | HET | ||
| SBS | Chr11 | 11831717 | C-G | HET | ||
| SBS | Chr11 | 13579628 | C-T | HET | ||
| SBS | Chr11 | 15422684 | T-G | HET | LOC_Os11g26850 | |
| SBS | Chr11 | 15555004 | G-T | HET | ||
| SBS | Chr11 | 15567450 | G-T | HET | ||
| SBS | Chr12 | 14105654 | C-A | HET | ||
| SBS | Chr12 | 1091661 | C-T | Homo | ||
| SBS | Chr2 | 13543161 | C-G | HET | ||
| SBS | Chr2 | 11771761 | G-T | Homo | LOC_Os02g20000 | |
| SBS | Chr2 | 21481439 | C-A | Homo | ||
| SBS | Chr2 | 34184356 | G-A | Homo | ||
| SBS | Chr3 | 9034175 | G-T | HET | ||
| SBS | Chr3 | 11797138 | G-A | HET | ||
| SBS | Chr3 | 25455238 | G-C | HET | ||
| SBS | Chr3 | 31683346 | G-T | Homo | ||
| SBS | Chr4 | 17645433 | C-T | Homo | LOC_Os04g29650 | |
| SBS | Chr5 | 3989855 | A-T | HET | ||
| SBS | Chr5 | 28043025 | G-A | HET | ||
| SBS | Chr5 | 15330089 | A-T | Homo | ||
| SBS | Chr5 | 21113979 | C-T | Homo | ||
| SBS | Chr6 | 14241754 | C-T | HET | ||
| SBS | Chr6 | 3111443 | G-A | Homo | ||
| SBS | Chr6 | 19934133 | T-C | Homo | ||
| SBS | Chr7 | 8769935 | C-T | HET | ||
| SBS | Chr7 | 2458484 | T-G | Homo | ||
| SBS | Chr7 | 29353356 | G-A | Homo | LOC_Os07g49030 | |
| SBS | Chr8 | 10329067 | A-G | HET | ||
| SBS | Chr8 | 20114654 | C-T | HET | ||
| SBS | Chr8 | 7170581 | C-T | Homo | ||
| SBS | Chr8 | 17598255 | G-A | Homo | ||
| SBS | Chr9 | 3705490 | T-A | HET | ||
| SBS | Chr9 | 5711925 | C-T | HET | LOC_Os09g10450 | |
| SBS | Chr9 | 18194320 | C-T | HET | LOC_Os09g29920 |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 7823946 | 7823950 | 4 | LOC_Os03g14380 |
| Deletion | Chr5 | 10673682 | 10673683 | 1 | |
| Deletion | Chr11 | 12146651 | 12146654 | 3 | |
| Deletion | Chr9 | 12298410 | 12298412 | 2 | |
| Deletion | Chr3 | 20450711 | 20450718 | 7 | |
| Deletion | Chr11 | 21033284 | 21033291 | 7 | LOC_Os11g35840 |
| Deletion | Chr5 | 26171762 | 26171783 | 21 | LOC_Os05g45020 |
| Deletion | Chr8 | 26810153 | 26810154 | 1 | |
| Deletion | Chr2 | 27520014 | 27520018 | 4 | |
| Deletion | Chr2 | 29100109 | 29100110 | 1 | LOC_Os02g47620 |
| Deletion | Chr2 | 29769256 | 29769261 | 5 | |
| Deletion | Chr3 | 30834513 | 30834532 | 19 | |
| Deletion | Chr1 | 37602607 | 37602615 | 8 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 19526014 | 19526014 | 1 | |
| Insertion | Chr2 | 33915860 | 33915860 | 1 | |
| Insertion | Chr8 | 18473774 | 18473774 | 1 |
No Inversion
No Translocation