Search Results
| Mutant Information |
|---|
| Mutant Name | FN_N1-150-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_N1-150-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 39
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 8168264 | G-A | HET | ||
| SBS | Chr1 | 27029229 | C-T | Homo | ||
| SBS | Chr1 | 40366243 | G-A | Homo | ||
| SBS | Chr10 | 3368572 | C-T | HET | LOC_Os10g06550 | |
| SBS | Chr10 | 5974303 | T-G | Homo | ||
| SBS | Chr10 | 15009747 | C-A | Homo | ||
| SBS | Chr11 | 18268050 | T-A | Homo | ||
| SBS | Chr2 | 11760147 | T-A | HET | LOC_Os02g19990 | |
| SBS | Chr2 | 11942050 | G-C | HET | ||
| SBS | Chr2 | 12461088 | T-C | HET | ||
| SBS | Chr2 | 23230069 | C-T | Homo | ||
| SBS | Chr2 | 24514837 | C-T | Homo | ||
| SBS | Chr2 | 28423728 | A-T | Homo | ||
| SBS | Chr3 | 6799083 | C-T | Homo | ||
| SBS | Chr3 | 19457437 | G-T | Homo | ||
| SBS | Chr3 | 22486587 | C-G | Homo | ||
| SBS | Chr3 | 23677164 | A-T | Homo | ||
| SBS | Chr4 | 1597540 | G-C | HET | ||
| SBS | Chr4 | 26493186 | G-C | HET | ||
| SBS | Chr4 | 737464 | G-T | Homo | ||
| SBS | Chr4 | 1313720 | G-C | Homo | ||
| SBS | Chr4 | 2033769 | A-G | Homo | ||
| SBS | Chr4 | 4934978 | C-A | Homo | LOC_Os04g09284 | |
| SBS | Chr4 | 22926957 | C-T | Homo | ||
| SBS | Chr5 | 10366172 | C-A | HET | ||
| SBS | Chr5 | 12611566 | T-C | Homo | ||
| SBS | Chr5 | 13476475 | G-A | Homo | ||
| SBS | Chr5 | 13678962 | C-T | Homo | ||
| SBS | Chr6 | 9138526 | G-A | Homo | ||
| SBS | Chr6 | 12332498 | A-T | Homo | ||
| SBS | Chr6 | 14925277 | C-T | Homo | ||
| SBS | Chr7 | 10757742 | G-T | HET | LOC_Os07g18154 | |
| SBS | Chr7 | 12617836 | G-C | HET | ||
| SBS | Chr7 | 17376622 | G-A | Homo | ||
| SBS | Chr8 | 14576806 | G-A | HET | ||
| SBS | Chr8 | 18839240 | G-T | HET | ||
| SBS | Chr8 | 26603842 | T-A | Homo | ||
| SBS | Chr9 | 17423302 | T-A | HET | ||
| SBS | Chr9 | 10051687 | G-T | Homo |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr8 | 208553 | 208554 | 1 | |
| Deletion | Chr2 | 677671 | 677673 | 2 | LOC_Os02g02200 |
| Deletion | Chr7 | 1085789 | 1085799 | 10 | |
| Deletion | Chr1 | 3411628 | 3411629 | 1 | |
| Deletion | Chr6 | 5268522 | 5268552 | 30 | |
| Deletion | Chr9 | 8174607 | 8174616 | 9 | |
| Deletion | Chr7 | 13763409 | 13763414 | 5 | |
| Deletion | Chr11 | 14621427 | 14621431 | 4 | |
| Deletion | Chr6 | 16679064 | 16679069 | 5 | |
| Deletion | Chr7 | 18165994 | 18191801 | 25807 | 4 |
| Deletion | Chr12 | 20349854 | 20349856 | 2 | |
| Deletion | Chr7 | 26446953 | 26447307 | 354 | |
| Deletion | Chr4 | 33974077 | 33974078 | 1 | |
| Deletion | Chr1 | 40657858 | 40657861 | 3 |
Insertions: 6
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 9570721 | 9672640 | |
| Inversion | Chr5 | 17712373 | 17721572 | LOC_Os05g30580 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 12769804 | Chr8 | 9694052 | 2 |
| Translocation | Chr11 | 18140603 | Chr8 | 9698840 |