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Mutant Information

Mutant Name	FN_N1-151-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_N1-151-1 Alignment File
Seed Availability	No
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 10

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23274428	C-T	HET	INTERGENIC
SBS	Chr1	24463754	C-A	HET	INTRON
SBS	Chr2	1100438	G-C	HET	INTERGENIC
SBS	Chr3	2196252	G-C	HET	INTERGENIC
SBS	Chr3	13418587	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g23210
SBS	Chr3	17715104	G-T	HET	INTRON
SBS	Chr6	1684833	G-T	HET	INTERGENIC
SBS	Chr6	13606853	T-C	HET	INTERGENIC
SBS	Chr9	22155342	C-G	HET	INTRON
SBS	Chr10	3486799	G-A	HET	INTERGENIC

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	7629182	762918	2
Deletion	Chr10	9130001	9198000	68000	9
Deletion	Chr4	13422957	13422977	20	LOC_Os04g23480
Deletion	Chr11	15077001	15115000	38000	5
Deletion	Chr9	16279916	16279918	2
Deletion	Chr9	16856811	168568	1
Deletion	Chr7	22327546	223275	1
Deletion	Chr12	23759130	237591	33
Deletion	Chr8	26400112	264001	10

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	7458217	7458224	8
Insertion	Chr1	18619720	18619769	50
Insertion	Chr3	1188536	1188543	8
Insertion	Chr5	15148327	15148350	24
Insertion	Chr6	12516533	12516533	1
Insertion	Chr11	4866717	4866718	2	LOC_Os11g09140
Insertion	Chr11	5207326	5207330	5	LOC_Os11g09750
Insertion	Chr11	16115664	16115679	16
Insertion	Chr11	25281122	25281122	1
Insertion	Chr12	9526762	9526763	2

No Inversion

No Translocation