Search Results
| Mutant Information |
|---|
| Mutant Name | FN_N1-169-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_N1-169-1 Alignment File |
| Seed Availability | No |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 43
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 14298338 | C-T | HET | ||
| SBS | Chr1 | 15043653 | C-G | HET | LOC_Os01g27000 | |
| SBS | Chr1 | 15834406 | C-T | HET | ||
| SBS | Chr1 | 20136587 | C-G | HET | ||
| SBS | Chr1 | 41514197 | C-T | HET | ||
| SBS | Chr1 | 25427803 | G-A | Homo | LOC_Os01g44320 | |
| SBS | Chr1 | 28624542 | A-T | Homo | ||
| SBS | Chr1 | 31870197 | A-T | Homo | ||
| SBS | Chr10 | 1013617 | T-A | HET | ||
| SBS | Chr10 | 5014654 | C-T | Homo | ||
| SBS | Chr10 | 18797838 | G-A | Homo | ||
| SBS | Chr10 | 18810969 | C-G | Homo | LOC_Os10g35210 | |
| SBS | Chr11 | 3880161 | C-A | HET | ||
| SBS | Chr11 | 18758259 | G-C | HET | LOC_Os11g31910 | |
| SBS | Chr11 | 5305014 | T-A | Homo | ||
| SBS | Chr11 | 10436647 | C-A | Homo | LOC_Os11g18510 | |
| SBS | Chr11 | 15902776 | C-A | Homo | ||
| SBS | Chr11 | 25681971 | G-A | Homo | ||
| SBS | Chr12 | 12170963 | A-T | Homo | ||
| SBS | Chr12 | 15840633 | A-T | Homo | ||
| SBS | Chr2 | 17588764 | G-A | HET | ||
| SBS | Chr2 | 26906842 | C-T | HET | ||
| SBS | Chr2 | 29753382 | A-T | Homo | ||
| SBS | Chr3 | 12844427 | A-T | HET | ||
| SBS | Chr3 | 25991394 | G-A | HET | ||
| SBS | Chr3 | 30842059 | T-A | Homo | ||
| SBS | Chr4 | 4329813 | G-T | HET | ||
| SBS | Chr4 | 16297312 | A-C | HET | ||
| SBS | Chr4 | 6796351 | A-G | Homo | ||
| SBS | Chr4 | 30362163 | G-A | Homo | ||
| SBS | Chr4 | 30362164 | C-A | Homo | ||
| SBS | Chr5 | 27454543 | C-T | Homo | ||
| SBS | Chr5 | 27454544 | G-A | Homo | ||
| SBS | Chr6 | 10102133 | G-T | HET | LOC_Os06g17410 | |
| SBS | Chr6 | 10629011 | C-A | HET | ||
| SBS | Chr6 | 12703208 | T-A | HET | ||
| SBS | Chr6 | 20728362 | G-A | Homo | ||
| SBS | Chr7 | 14208179 | G-A | HET | ||
| SBS | Chr7 | 14819545 | C-T | HET | ||
| SBS | Chr7 | 15473762 | T-A | HET | ||
| SBS | Chr8 | 25135913 | A-T | Homo | ||
| SBS | Chr9 | 11342768 | A-T | HET | ||
| SBS | Chr9 | 5580244 | T-A | Homo |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 7523877 | 7523882 | 5 | |
| Deletion | Chr12 | 7902693 | 7902860 | 167 | |
| Deletion | Chr3 | 9546101 | 9546166 | 65 | |
| Deletion | Chr7 | 14819582 | 14819631 | 49 | |
| Deletion | Chr12 | 20094883 | 20094887 | 4 | LOC_Os12g33220 |
| Deletion | Chr6 | 20976938 | 20976948 | 10 | |
| Deletion | Chr10 | 22206689 | 22206707 | 18 | LOC_Os10g41320 |
| Deletion | Chr6 | 22278456 | 22278457 | 1 | |
| Deletion | Chr5 | 23117705 | 23117715 | 10 | |
| Deletion | Chr12 | 23572740 | 23572741 | 1 | |
| Deletion | Chr8 | 25104527 | 25104542 | 15 | |
| Deletion | Chr8 | 25616375 | 25616556 | 181 | |
| Deletion | Chr3 | 25658534 | 25658544 | 10 | |
| Deletion | Chr3 | 28492066 | 28492067 | 1 | |
| Deletion | Chr5 | 29375434 | 29375458 | 24 | |
| Deletion | Chr2 | 32041323 | 32041331 | 8 | |
| Deletion | Chr3 | 34177153 | 34185854 | 8701 | |
| Deletion | Chr1 | 39117699 | 39117705 | 6 | |
| Deletion | Chr1 | 43113249 | 43113257 | 8 | LOC_Os01g74440 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr7 | 17560179 | 17560180 | 2 | |
| Insertion | Chr8 | 27506747 | 27506747 | 1 |
Inversions: 7
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 4042469 | 4124578 | |
| Inversion | Chr2 | 7261134 | 7495409 | 2 |
| Inversion | Chr2 | 7261477 | 7591188 | |
| Inversion | Chr2 | 7495634 | 7578370 | 2 |
| Inversion | Chr12 | 20862332 | 22212773 | LOC_Os12g34440 |
| Inversion | Chr1 | 32933790 | 33211643 | LOC_Os01g57480 |
| Inversion | Chr1 | 33005449 | 33211643 | 2 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 24368741 | Chr2 | 7578364 | 2 |
| Translocation | Chr1 | 32933784 | Chr3 | 34145104 | LOC_Os03g60030 |
Tandem duplications: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Tandem Duplication | Chr3 | 36136483 | 36140436 | 3953 |