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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	2129256	G-A	HET
SBS	Chr1	9520560	C-T	HET
SBS	Chr1	29363033	C-T	HET
SBS	Chr1	30874501	G-A	HET
SBS	Chr1	39121804	G-C	HET
SBS	Chr1	4360072	G-T	Homo	LOC_Os01g08720
SBS	Chr1	24486937	G-A	Homo	LOC_Os01g42990
SBS	Chr10	5269428	C-T	HET
SBS	Chr10	5709640	C-T	HET	LOC_Os10g10380
SBS	Chr10	12213495	G-A	HET
SBS	Chr11	24796425	C-T	HET
SBS	Chr11	26037750	G-C	HET
SBS	Chr11	28725876	G-A	Homo
SBS	Chr12	9957165	G-A	Homo
SBS	Chr2	9562163	C-T	Homo
SBS	Chr2	30991025	G-A	Homo	LOC_Os02g50750
SBS	Chr2	34566539	A-T	Homo
SBS	Chr3	13502297	G-A	Homo
SBS	Chr3	19677567	T-C	Homo
SBS	Chr3	32490694	G-T	Homo
SBS	Chr4	29686905	G-A	HET	LOC_Os04g49790
SBS	Chr5	6980375	A-G	HET
SBS	Chr6	9022299	G-A	HET	LOC_Os06g15900
SBS	Chr6	14084911	C-A	HET
SBS	Chr6	29497155	T-A	HET
SBS	Chr6	29818343	A-T	HET	LOC_Os06g49210
SBS	Chr7	17505771	T-C	Homo
SBS	Chr7	26044937	C-T	Homo
SBS	Chr8	1816990	G-A	HET
SBS	Chr8	7521580	G-T	HET
SBS	Chr9	15625908	C-A	HET
SBS	Chr9	11697755	A-G	Homo

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	437757	437761	4	LOC_Os06g01750
Deletion	Chr8	4013684	4013685	1
Deletion	Chr2	4213637	4213652	15
Deletion	Chr2	4481840	4481845	5
Deletion	Chr6	5935141	5935149	8
Deletion	Chr1	6242911	6242912	1
Deletion	Chr6	6329750	6329761	11
Deletion	Chr5	8346607	8346608	1
Deletion	Chr6	8384027	8384034	7
Deletion	Chr7	8837871	8837873	2
Deletion	Chr1	10513583	10513591	8
Deletion	Chr5	15901732	15901747	15
Deletion	Chr9	15951966	15951975	9
Deletion	Chr1	16071958	16071991	33
Deletion	Chr9	16403286	16403288	2
Deletion	Chr8	16507793	16507804	11
Deletion	Chr5	19531377	19531378	1
Deletion	Chr3	19650401	19674901	24500	3
Deletion	Chr3	21741343	21741350	7
Deletion	Chr5	28644079	28644080	1
Deletion	Chr2	31853611	31853612	1
Deletion	Chr3	32334018	32334019	1

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	25476436	25476436	1
Insertion	Chr3	13009969	13009969	1
Insertion	Chr3	22199191	22199191	1
Insertion	Chr4	19018486	19018487	2
Insertion	Chr5	17718147	17718147	1
Insertion	Chr6	1451612	1451612	1
Insertion	Chr6	23858593	23858593	1
Insertion	Chr6	27865512	27865512	1
Insertion	Chr9	15967115	15967115	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1417050	1535473
Inversion	Chr3	19642760	19775313
Inversion	Chr3	19650388	19769713	LOC_Os03g35690

No Translocation

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