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| Mutant Information |
|---|
| Mutant Name | FN_N1-26-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_N1-26-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 31805080 | C-T | Homo | ||
| SBS | Chr10 | 10509471 | A-G | Homo | ||
| SBS | Chr10 | 12824281 | G-A | Homo | ||
| SBS | Chr10 | 1953673 | C-T | Homo | ||
| SBS | Chr11 | 2387377 | G-A | Homo | ||
| SBS | Chr11 | 321637 | G-A | Homo | ||
| SBS | Chr12 | 14588983 | C-T | Homo | ||
| SBS | Chr2 | 10283665 | T-A | Homo | ||
| SBS | Chr2 | 1992086 | G-A | HET | ||
| SBS | Chr2 | 26118008 | A-G | HET | ||
| SBS | Chr2 | 9476256 | A-G | Homo | LOC_Os02g16580 | |
| SBS | Chr3 | 15549508 | G-C | HET | ||
| SBS | Chr3 | 28338400 | G-A | HET | ||
| SBS | Chr3 | 28338401 | G-T | HET | ||
| SBS | Chr3 | 28338402 | A-G | HET | ||
| SBS | Chr4 | 12367153 | T-G | Homo | ||
| SBS | Chr4 | 13334079 | G-A | Homo | ||
| SBS | Chr4 | 28458410 | C-T | HET | ||
| SBS | Chr5 | 22816893 | C-T | HET | LOC_Os05g38900 | |
| SBS | Chr5 | 22816894 | A-T | HET | ||
| SBS | Chr5 | 9783060 | G-A | HET | ||
| SBS | Chr7 | 12409386 | C-T | HET | ||
| SBS | Chr8 | 19987271 | T-A | HET | ||
| SBS | Chr8 | 21602750 | G-C | Homo | LOC_Os08g34400 | |
| SBS | Chr8 | 22992666 | T-C | Homo | LOC_Os08g36420 | |
| SBS | Chr8 | 28430392 | C-T | Homo | ||
| SBS | Chr9 | 17138533 | C-A | Homo | ||
| SBS | Chr9 | 1832644 | C-A | HET | ||
| SBS | Chr9 | 6512217 | C-T | HET |
Deletions: 22
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 1354001 | 1414601 | 60600 | 14 |
| Deletion | Chr5 | 4877759 | 4877773 | 14 | |
| Deletion | Chr6 | 5112518 | 5112519 | 1 | |
| Deletion | Chr8 | 7669180 | 7669182 | 2 | |
| Deletion | Chr6 | 8840321 | 8840336 | 15 | |
| Deletion | Chr8 | 9531179 | 9531183 | 4 | |
| Deletion | Chr5 | 9738828 | 9738830 | 2 | |
| Deletion | Chr1 | 10889251 | 10889261 | 10 | |
| Deletion | Chr1 | 10889253 | 10889261 | 8 | |
| Deletion | Chr3 | 11673592 | 11673601 | 9 | |
| Deletion | Chr5 | 13722527 | 13722529 | 2 | |
| Deletion | Chr2 | 15721186 | 15721187 | 1 | |
| Deletion | Chr3 | 16569065 | 16569070 | 5 | |
| Deletion | Chr4 | 19064533 | 19064537 | 4 | |
| Deletion | Chr5 | 19096735 | 19096738 | 3 | LOC_Os05g32610 |
| Deletion | Chr12 | 19979513 | 19979520 | 7 | LOC_Os12g33060 |
| Deletion | Chr11 | 21534556 | 21534557 | 1 | |
| Deletion | Chr3 | 22762131 | 22762136 | 5 | |
| Deletion | Chr2 | 22799758 | 22799766 | 8 | |
| Deletion | Chr3 | 25910423 | 25910433 | 10 | |
| Deletion | Chr12 | 26533785 | 26533829 | 44 | |
| Deletion | Chr1 | 27270774 | 27270791 | 17 |
Insertions: 8
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 9903923 | 9936277 | |
| Inversion | Chr10 | 22254001 | 22595166 | LOC_Os10g42030 |
No Translocation