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Mutant Information

Mutant Name	FN_N2-29a-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_N2-29a-1 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	30562626	T-A	HET
SBS	Chr1	32189009	G-A	HET
SBS	Chr1	32576043	C-T	HET
SBS	Chr1	39488042	T-C	HET
SBS	Chr1	4974436	A-G	Homo
SBS	Chr11	11179822	G-A	Homo
SBS	Chr12	7664667	A-T	Homo
SBS	Chr2	11126458	T-A	HET
SBS	Chr2	11553718	A-T	Homo	LOC_Os02g19750
SBS	Chr2	11553719	A-T	Homo	LOC_Os02g19750
SBS	Chr2	26392004	C-T	Homo
SBS	Chr2	34034073	G-T	Homo
SBS	Chr3	6149901	A-T	Homo
SBS	Chr3	14414151	A-C	Homo	LOC_Os03g25220
SBS	Chr3	33574332	T-C	Homo
SBS	Chr4	1230736	C-A	HET
SBS	Chr4	29845788	C-G	Homo
SBS	Chr5	3189351	T-A	HET
SBS	Chr5	22411515	G-A	HET
SBS	Chr5	26919768	A-G	HET
SBS	Chr5	27370940	A-G	HET
SBS	Chr6	5141046	C-T	HET
SBS	Chr6	15114043	G-T	Homo
SBS	Chr6	17992188	C-T	Homo
SBS	Chr7	2618135	G-T	HET
SBS	Chr7	2618148	G-T	HET
SBS	Chr8	10592183	A-C	HET	LOC_Os08g17320
SBS	Chr8	15591289	T-A	HET
SBS	Chr9	12162636	C-T	HET

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	731901	798501	66600	7
Deletion	Chr7	1133395	1133404	9
Deletion	Chr12	1847372	1847385	13
Deletion	Chr12	2122249	2122252	3
Deletion	Chr10	2148317	2148320	3	LOC_Os10g04520
Deletion	Chr7	2372266	2372281	15
Deletion	Chr7	2637057	2637063	6	LOC_Os07g05610
Deletion	Chr10	4984611	4984623	12
Deletion	Chr8	5790598	5790599	1
Deletion	Chr3	6569881	6569884	3	LOC_Os03g12440
Deletion	Chr3	6721429	6721430	1
Deletion	Chr10	7001176	7001178	2	LOC_Os10g12570
Deletion	Chr2	8909418	8909432	14
Deletion	Chr2	11446901	11546801	99900	13
Deletion	Chr2	11655702	11655879	177
Deletion	Chr12	12804267	12804271	4
Deletion	Chr12	13868006	13868021	15
Deletion	Chr12	14047519	14047521	2
Deletion	Chr7	14761353	14761354	1
Deletion	Chr1	14910241	14910242	1
Deletion	Chr2	16717561	16717573	12
Deletion	Chr5	19031007	19031010	3
Deletion	Chr5	21840133	21840137	4	LOC_Os05g37340
Deletion	Chr5	24805184	24805198	14
Deletion	Chr3	25691008	25691010	2
Deletion	Chr2	25922301	25976201	53900	9
Deletion	Chr8	27096677	27096685	8
Deletion	Chr6	27260683	27260697	14	LOC_Os06g45050
Deletion	Chr6	27328000	27328004	4	LOC_Os06g45200
Deletion	Chr4	30102212	30102216	4
Deletion	Chr1	36025367	36025369	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	2246927	2246927	1
Insertion	Chr2	19219205	19219205	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	4712161	5012694	LOC_Os02g09170
Inversion	Chr3	14491946	17043886	2
Inversion	Chr12	16002452	16054249	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	14491935	Chr1	12839066	2
Translocation	Chr2	27814541	Chr7	731878

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr5	3171704	3194047	22343	3

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