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Mutant Information |
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Mutant Name | N1-130-2 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download N1-130-2 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 5
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 37721998 | C-T | Homo | INTERGENIC | |
SBS | Chr4 | 34710987 | C-T | HET | INTERGENIC | |
SBS | Chr5 | 21113979 | C-T | Homo | INTRON | |
SBS | Chr6 | 3111443 | G-A | HET | INTERGENIC | |
SBS | Chr8 | 9601011 | G-A | Homo | INTERGENIC |
Deletions: 15
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr8 | 3646989 | 3647006 | 17 | |
Deletion | Chr3 | 7823946 | 7823950 | 4 | LOC_Os03g14380 |
Deletion | Chr2 | 9996132 | 9996133 | 1 | |
Deletion | Chr5 | 10673682 | 10673683 | 1 | |
Deletion | Chr2 | 11658868 | 11658872 | 4 | |
Deletion | Chr11 | 12146651 | 12146654 | 3 | |
Deletion | Chr9 | 12298410 | 12298412 | 2 | |
Deletion | Chr3 | 20450711 | 20450718 | 7 | |
Deletion | Chr1 | 20609873 | 20609874 | 1 | |
Deletion | Chr11 | 21033284 | 21033291 | 7 | LOC_Os11g35840 |
Deletion | Chr3 | 23717948 | 23717952 | 4 | |
Deletion | Chr5 | 26171762 | 26171783 | 21 | LOC_Os05g45020 |
Deletion | Chr2 | 29100109 | 29100110 | 1 | LOC_Os02g47620 |
Deletion | Chr3 | 30834513 | 30834532 | 19 | |
Deletion | Chr1 | 37602607 | 37602615 | 8 |
Insertions: 6
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr10 | 5901879 | 6009910 | LOC_Os10g10680 |
Inversion | Chr10 | 6009910 | 14700645 | |
Inversion | Chr3 | 13365504 | 13469370 | LOC_Os03g23110 |
Translocations: 1
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr11 | 2062180 | Chr9 | 17196078 | LOC_Os11g04840 |