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Mutant Information

Mutant Name	N1-130-3 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download N1-130-3 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 6

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr12	19286802	G-A	Homo	INTERGENIC
SBS	Chr1	37721998	C-T	Homo	INTERGENIC
SBS	Chr4	34710987	C-T	HET	INTERGENIC
SBS	Chr5	21113979	C-T	Homo	INTRON
SBS	Chr6	3111443	G-A	Homo	INTERGENIC
SBS	Chr8	9601011	G-A	Homo	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	3646989	3647006	17
Deletion	Chr3	7823946	7823950	4	LOC_Os03g14380
Deletion	Chr2	9996132	9996133	1
Deletion	Chr5	10673682	10673683	1
Deletion	Chr2	11658868	11658872	4
Deletion	Chr9	12298410	12298412	2
Deletion	Chr10	16044098	16044099	1
Deletion	Chr10	18411080	18411081	1
Deletion	Chr3	20450711	20450718	7
Deletion	Chr11	21925517	21925519	2
Deletion	Chr3	23717948	23717952	4
Deletion	Chr5	26171762	26171783	21	LOC_Os05g45020
Deletion	Chr3	30834513	30834532	19
Deletion	Chr1	37602607	37602615	8

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	12999323	12999323	1
Insertion	Chr2	6024005	6024005	1
Insertion	Chr2	20999122	20999122	1
Insertion	Chr8	18473774	18473774	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	5901882	5969902	LOC_Os10g10680
Inversion	Chr10	6009910	14700645

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1201306	Chr10	14698989
Translocation	Chr9	18188812	Chr7	29272525	LOC_Os07g48920
Translocation	Chr9	18188816	Chr7	23746369
Translocation	Chr9	18188819	Chr3	14571298	LOC_Os03g25500
Translocation	Chr9	18195005	Chr3	14571313	2
Translocation	Chr9	18195013	Chr7	29272497	LOC_Os07g48920