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Mutant Information

Variant Information

Single base substitutions: 6

Variant Type	Chromosome	Position	Change	Genotype	Effect
SBS	Chr1	28624542	A-T	Homo	INTERGENIC
SBS	Chr3	30842059	T-A	Homo	INTERGENIC
SBS	Chr4	30362164	C-A	Homo	UTR_3_PRIME
SBS	Chr5	27454544	G-A	Homo	INTRON
SBS	Chr8	506537	C-T	HET	INTERGENIC
SBS	Chr11	25681971	G-A	HET	INTRON

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1470144	1470145	1
Deletion	Chr2	7496001	7591000	95000	10
Deletion	Chr6	7523877	7523882	5
Deletion	Chr3	9546101	9546166	65	LOC_Os03g17164
Deletion	Chr8	10177457	10177458	1
Deletion	Chr5	18626411	18626412	1
Deletion	Chr12	19838065	19838075	10
Deletion	Chr4	19901533	19901540	7	LOC_Os04g32940
Deletion	Chr12	20094883	20094887	4	LOC_Os12g33220
Deletion	Chr6	20976938	20976948	10
Deletion	Chr12	21539362	21539364	2
Deletion	Chr6	22278456	22278457	1
Deletion	Chr3	22517148	22517149	1
Deletion	Chr5	23117705	23117715	10
Deletion	Chr12	23572740	23572741	1
Deletion	Chr8	25104527	25104542	15
Deletion	Chr3	25113718	25113720	2
Deletion	Chr12	25469460	25469462	2
Deletion	Chr8	25616375	25616556	181
Deletion	Chr7	27042546	27042547	1
Deletion	Chr2	27833483	27833484	1
Deletion	Chr3	28492066	28492067	1
Deletion	Chr5	29375434	29375458	24
Deletion	Chr2	32041323	32041331	8
Deletion	Chr3	34177001	34186000	9000
Deletion	Chr1	39117699	39117705	6

Insertions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	20142085	20142097	13
Insertion	Chr11	22539294	22539301	8
Insertion	Chr1	23960258	23960263	6	LOC_Os01g42270
Insertion	Chr11	4888630	4888633	4
Insertion	Chr2	19219927	19219930	4
Insertion	Chr2	35638525	35638528	4
Insertion	Chr4	17630012	17630014	3
Insertion	Chr9	14947077	14947079	3
Insertion	Chr1	8886536	8886537	2
Insertion	Chr11	28141410	28141411	2
Insertion	Chr2	7763376	7763377	2
Insertion	Chr2	16513963	16513964	2
Insertion	Chr2	18025170	18025171	2
Insertion	Chr4	18036543	18036544	2
Insertion	Chr6	20677305	20677306	2
Insertion	Chr7	1258693	1258694	2
Insertion	Chr7	6369316	6369317	2
Insertion	Chr7	20769226	20769227	2	LOC_Os07g34650
Insertion	Chr8	23966610	23966611	2
Insertion	Chr1	23116122	23116122	1
Insertion	Chr1	34407726	34407726	1
Insertion	Chr5	20428418	20428418	1
Insertion	Chr8	27506747	27506747	1
Insertion	Chr9	14457867	14457867	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	4042473	4124579
Inversion	Chr2	7261134	7495409	2
Inversion	Chr2	7261477	7591188
Inversion	Chr12	20862332	22212773	LOC_Os12g34440
Inversion	Chr1	32933790	33211643	LOC_Os01g57480
Inversion	Chr1	33005449	33211643	2

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3606452	Chr6	5541112
Translocation	Chr9	22104307	Chr4	25255345	LOC_Os04g42700
Translocation	Chr9	22393238	Chr4	25255377	LOC_Os04g42700
Translocation	Chr3	34145092	Chr1	32933776	LOC_Os03g60030
Translocation	Chr3	34177151	Chr1	33005460	LOC_Os01g57110

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr3	36136483	36140436	3953

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