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| Mutant Information |
|---|
| Mutant Name | N1-169-3 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download N1-169-3 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 10
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 28624542 | A-T | HET | INTERGENIC | |
| SBS | Chr11 | 25681971 | G-A | HET | INTRON | |
| SBS | Chr3 | 30842059 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 34180630 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 34180653 | G-C | HET | INTERGENIC | |
| SBS | Chr3 | 34180679 | A-G | HET | INTERGENIC | |
| SBS | Chr4 | 30362164 | C-A | Homo | UTR_3_PRIME | |
| SBS | Chr5 | 27454544 | G-A | Homo | INTRON | |
| SBS | Chr7 | 3766792 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 506537 | C-T | HET | INTERGENIC |
Deletions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 23572740 | 23572741 | 1 | |
| Deletion | Chr3 | 34177001 | 34186000 | 9000 | |
| Deletion | Chr3 | 34179264 | 34179265 | 1 |
No Insertion
Inversions: 16
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 1572789 | 2291845 | |
| Inversion | Chr8 | 4042473 | 4124579 | |
| Inversion | Chr10 | 6833652 | 9734741 | 2 |
| Inversion | Chr2 | 7495634 | 7578370 | 2 |
| Inversion | Chr12 | 8533313 | 8545507 | |
| Inversion | Chr12 | 8542579 | 13372024 | LOC_Os12g23590 |
| Inversion | Chr12 | 8557338 | 20627964 | |
| Inversion | Chr2 | 12183555 | 19607642 | |
| Inversion | Chr12 | 12392770 | 18743064 | LOC_Os12g22030 |
| Inversion | Chr8 | 12473606 | 12739660 | 2 |
| Inversion | Chr12 | 13343292 | 13352459 | |
| Inversion | Chr10 | 15611020 | 16606419 | |
| Inversion | Chr4 | 16907551 | 17309834 | |
| Inversion | Chr1 | 32933790 | 33211643 | LOC_Os01g57480 |
| Inversion | Chr1 | 33005449 | 33211643 | 2 |
| Inversion | Chr1 | 35220203 | 38918138 |
No Translocation