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Mutant Information |
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Mutant Name | N1-169-6 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download N1-169-6 Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 8
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 15834406 | C-T | Homo | INTERGENIC | |
SBS | Chr3 | 30842059 | T-A | Homo | INTERGENIC | |
SBS | Chr3 | 34180630 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 34180653 | G-C | HET | INTERGENIC | |
SBS | Chr3 | 34180679 | A-G | HET | INTERGENIC | |
SBS | Chr4 | 30362164 | C-A | Homo | UTR_3_PRIME | |
SBS | Chr5 | 27454544 | G-A | Homo | INTRON | |
SBS | Chr11 | 25681971 | G-A | Homo | INTRON |
Deletions: 14
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr4 | 19901533 | 19901540 | 7 | LOC_Os04g32940 |
Deletion | Chr6 | 20976938 | 20976948 | 10 | |
Deletion | Chr9 | 22105001 | 22334000 | 229000 | 51 |
Deletion | Chr6 | 22278456 | 22278457 | 1 | |
Deletion | Chr9 | 22340001 | 22394000 | 54000 | 11 |
Deletion | Chr3 | 23113620 | 23113636 | 16 | |
Deletion | Chr5 | 23117705 | 23117715 | 10 | |
Deletion | Chr12 | 23572740 | 23572741 | 1 | |
Deletion | Chr8 | 25616375 | 25616556 | 181 | |
Deletion | Chr5 | 29375434 | 29375458 | 24 | |
Deletion | Chr2 | 32041323 | 32041331 | 8 | |
Deletion | Chr3 | 34177001 | 34186000 | 9000 | |
Deletion | Chr3 | 34179264 | 34179265 | 1 | |
Deletion | Chr1 | 39117699 | 39117705 | 6 |
Insertions: 1
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr11 | 27475952 | 27475960 | 9 |
Inversions: 5
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr8 | 4042473 | 4124579 | |
Inversion | Chr2 | 7261134 | 7495409 | 2 |
Inversion | Chr12 | 20862332 | 22212773 | LOC_Os12g34440 |
Inversion | Chr1 | 32933790 | 33211643 | LOC_Os01g57480 |
Inversion | Chr1 | 33005449 | 33211643 | 2 |
Translocations: 5
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 2067943 | Chr6 | 5544300 | |
Translocation | Chr9 | 22393238 | Chr4 | 25255377 | LOC_Os04g42700 |
Translocation | Chr4 | 24368741 | Chr2 | 7578364 | 2 |
Translocation | Chr3 | 34145099 | Chr1 | 32933784 | LOC_Os03g60030 |
Translocation | Chr3 | 34177151 | Chr1 | 33005460 | LOC_Os01g57110 |
Tandem duplications: 1
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Tandem Duplication | Chr3 | 36136483 | 36140436 | 3953 |