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Mutant Information

Mutant Name	W279-4-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W279-4-1 Alignment File
Seed Availability	No
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20087298	A-T	HET	INTERGENIC
SBS	Chr1	26980379	A-T	HOMO	INTERGENIC
SBS	Chr12	27174642	G-A	HET	INTERGENIC
SBS	Chr2	18373163	C-G	HET	INTERGENIC
SBS	Chr2	22877805	A-G	HOMO	INTRON
SBS	Chr3	19590610	A-G	HOMO	INTRON
SBS	Chr4	4762117	T-G	HET	INTERGENIC
SBS	Chr4	6940698	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	7672097	G-A	HOMO	INTERGENIC
SBS	Chr4	8412566	A-G	HOMO	INTERGENIC
SBS	Chr6	10013825	G-C	HOMO	UTR_3_PRIME
SBS	Chr6	14765884	G-A	HOMO	INTERGENIC
SBS	Chr6	28693497	A-G	HET	INTRON
SBS	Chr6	7582243	G-A	HET	INTERGENIC
SBS	Chr6	7692233	C-A	HET	INTERGENIC
SBS	Chr6	7692234	T-A	HET	INTERGENIC
SBS	Chr8	2689337	C-T	HOMO	INTERGENIC
SBS	Chr9	10277570	G-A	HET	INTERGENIC
SBS	Chr9	16295801	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g26820

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	867039	867043	4
Deletion	Chr11	2796538	2796543	5
Deletion	Chr8	5655936	5655997	61
Deletion	Chr9	5976130	5976133	3
Deletion	Chr2	7389002	7389071	69	LOC_Os02g13730
Deletion	Chr1	7755286	7755303	17
Deletion	Chr5	8760519	8760523	4
Deletion	Chr12	12645995	12646005	10
Deletion	Chr2	13554462	13554470	8
Deletion	Chr9	14862664	14871536	8872	3
Deletion	Chr11	16214394	16214405	11
Deletion	Chr8	19226608	19226609	1
Deletion	Chr1	19726111	19726116	5
Deletion	Chr2	24977354	24977359	5
Deletion	Chr4	25684001	25694000	10000	LOC_Os04g43410
Deletion	Chr7	27620753	27620754	1
Deletion	Chr3	29095560	29095572	12

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	17485054	17485057	4
Insertion	Chr2	4396816	4396817	2
Insertion	Chr2	7763376	7763377	2
Insertion	Chr8	14740268	14740273	6
Insertion	Chr9	11636732	11636732	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	24624723	25057668	LOC_Os04g42340
Inversion	Chr1	34160687	35219234	LOC_Os01g60890
Inversion	Chr1	34160800	35225840	LOC_Os01g60900
Inversion	Chr4	34975676	35028026	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	14862681	Chr5	2661136
Translocation	Chr9	14862975	Chr5	2660673
Translocation	Chr4	24020591	Chr1	35225839	LOC_Os01g60900
Translocation	Chr4	25693488	Chr1	35223704	LOC_Os04g43410