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| Mutant Information |
|---|
| Mutant Name | W313-1-1-1-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download W313-1-1-1-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 22948087 | G-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 40456904 | T-G | HOMO | INTERGENIC | |
| SBS | Chr1 | 40656343 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g70220 |
| SBS | Chr11 | 22820395 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os11g38510 |
| SBS | Chr11 | 5676957 | A-G | HET | INTERGENIC | |
| SBS | Chr12 | 23216919 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr12 | 24656479 | A-G | HOMO | INTERGENIC | |
| SBS | Chr12 | 25557744 | T-A | HET | INTERGENIC | |
| SBS | Chr12 | 2961895 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr12 | 3503665 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr2 | 12923646 | T-C | HOMO | INTERGENIC | |
| SBS | Chr3 | 31376491 | T-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 9010315 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 14201685 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 33394567 | G-A | HOMO | UTR_5_PRIME | |
| SBS | Chr4 | 4686630 | G-T | HET | INTERGENIC | |
| SBS | Chr4 | 4756446 | T-C | HOMO | INTERGENIC | |
| SBS | Chr5 | 12669415 | G-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 27318857 | T-A | HOMO | INTRON | |
| SBS | Chr5 | 6893618 | A-G | HOMO | INTERGENIC | |
| SBS | Chr6 | 14631535 | G-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 16917794 | T-A | HOMO | INTERGENIC | |
| SBS | Chr6 | 31226990 | A-G | HOMO | INTERGENIC | |
| SBS | Chr9 | 13472547 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os09g22280 |
| SBS | Chr9 | 13472548 | G-A | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr9 | 13472549 | G-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os09g22280 |
| SBS | Chr9 | 20505028 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 3700541 | C-T | HET | SYNONYMOUS_CODING |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 798908 | 798917 | 9 | |
| Deletion | Chr11 | 1560474 | 1560475 | 1 | |
| Deletion | Chr5 | 2679141 | 2679142 | 1 | |
| Deletion | Chr9 | 3877430 | 3877431 | 1 | LOC_Os09g07680 |
| Deletion | Chr7 | 5732777 | 5732778 | 1 | |
| Deletion | Chr5 | 6289971 | 6289973 | 2 | |
| Deletion | Chr10 | 13982879 | 13982882 | 3 | |
| Deletion | Chr11 | 14912271 | 14912275 | 4 | LOC_Os11g26070 |
| Deletion | Chr12 | 16223407 | 16223408 | 1 | |
| Deletion | Chr10 | 16568050 | 16568060 | 10 | |
| Deletion | Chr12 | 17563175 | 17563177 | 2 | |
| Deletion | Chr11 | 28375073 | 28375074 | 1 | |
| Deletion | Chr7 | 28489268 | 28489274 | 6 | LOC_Os07g47690 |
| Deletion | Chr1 | 35822959 | 35822960 | 1 |
Insertions: 6
No Inversion
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 17609341 | Chr4 | 9704476 | |
| Translocation | Chr9 | 17617304 | Chr4 | 9704454 | LOC_Os09g28960 |