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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12888627	A-T	HOMO	INTERGENIC
SBS	Chr1	20420448	C-T	HET	INTERGENIC
SBS	Chr1	28480691	T-G	HET	INTRON
SBS	Chr1	28480692	A-T	HET	INTRON
SBS	Chr1	33359475	G-T	HET	UTR_3_PRIME
SBS	Chr3	29000709	A-G	HOMO	INTERGENIC
SBS	Chr3	31129205	G-A	HOMO	INTERGENIC
SBS	Chr3	32723373	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g57370
SBS	Chr4	12797621	G-A	HET	INTRON
SBS	Chr4	34743936	T-C	HOMO	INTRON
SBS	Chr5	23393020	G-T	HET	INTERGENIC
SBS	Chr5	25025553	C-T	HET	INTRON
SBS	Chr5	26553793	A-G	HOMO	INTERGENIC
SBS	Chr5	26686478	G-A	HET	UTR_5_PRIME
SBS	Chr6	17364138	G-A	HOMO	INTERGENIC
SBS	Chr6	27552763	G-A	HOMO	INTERGENIC
SBS	Chr7	7535799	T-C	HET	INTERGENIC
SBS	Chr7	19156399	A-G	HET	INTERGENIC
SBS	Chr7	28621709	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g47920
SBS	Chr8	3976600	G-T	HOMO	INTRON
SBS	Chr8	3979521	A-T	HOMO	INTERGENIC
SBS	Chr8	8015298	C-T	HOMO	INTERGENIC
SBS	Chr8	9516709	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g15670
SBS	Chr8	24731831	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g39160
SBS	Chr8	24731832	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g39160
SBS	Chr8	25168967	G-A	HOMO	INTRON
SBS	Chr9	8678533	G-A	HET	INTRON
SBS	Chr10	2207772	C-T	HOMO	INTERGENIC
SBS	Chr10	22824430	A-T	HET	INTERGENIC
SBS	Chr11	1144520	C-T	HET	INTERGENIC
SBS	Chr11	9993606	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g17850
SBS	Chr12	3995526	A-G	HOMO	INTERGENIC
SBS	Chr12	6622379	C-T	HOMO	INTRON
SBS	Chr12	16286729	G-A	HET	INTERGENIC
SBS	Chr12	16324907	G-A	HOMO	INTERGENIC
SBS	Chr12	19221222	C-A	HOMO	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	234042	234043	1
Deletion	Chr10	1486682	1486685	3
Deletion	Chr3	5634398	5634399	1
Deletion	Chr11	5785664	5785665	1
Deletion	Chr1	6335001	6376000	41000	6
Deletion	Chr5	6539473	6539474	1
Deletion	Chr9	6667509	6667517	8
Deletion	Chr6	6712802	6712832	30	LOC_Os06g12380
Deletion	Chr7	10437181	10437186	5
Deletion	Chr3	12837734	12837942	208	LOC_Os03g22420
Deletion	Chr11	13763315	13763329	14
Deletion	Chr5	15966372	16003360	36988	7
Deletion	Chr3	18104177	18131062	26885	2
Deletion	Chr11	20858001	21248000	390000	56
Deletion	Chr7	21675069	21675072	3	LOC_Os07g36260
Deletion	Chr7	23178452	23178469	17	LOC_Os07g38590
Deletion	Chr8	23317693	23317701	8
Deletion	Chr3	24271243	24271248	5
Deletion	Chr1	24486443	24486444	1
Deletion	Chr3	25676794	25676808	14
Deletion	Chr7	26607989	26608006	17
Deletion	Chr3	29224001	29267000	43000	3
Deletion	Chr4	34732709	34732710	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	28281687	28281690	4
Insertion	Chr9	19665088	19665089	2	LOC_Os09g32952
Insertion	Chr2	6402282	6402282	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	18909497	18926696	LOC_Os07g31850

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	3993521	Chr1	6335187
Translocation	Chr5	5747897	Chr1	6374430
Translocation	Chr7	14278859	Chr3	29224101	LOC_Os07g25040
Translocation	Chr7	14278861	Chr3	29267085	2
Translocation	Chr11	20857979	Chr5	5747826	LOC_Os05g10560
Translocation	Chr11	21247463	Chr5	5746764

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