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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13243853	G-T	HET	INTRON
SBS	Chr1	22675380	T-A	HOMO	INTERGENIC
SBS	Chr1	25148550	G-A	HET	INTERGENIC
SBS	Chr1	30047182	C-T	HET	INTERGENIC
SBS	Chr1	32347661	C-T	HOMO	INTRON
SBS	Chr1	32347681	C-G	HOMO	INTRON
SBS	Chr1	40913772	A-G	HOMO	INTERGENIC
SBS	Chr1	5591533	G-A	HET	INTERGENIC
SBS	Chr1	7490120	C-T	HET	INTERGENIC
SBS	Chr10	9278119	G-A	HOMO	INTERGENIC
SBS	Chr11	11389112	C-A	HOMO	INTRON
SBS	Chr11	16440164	C-A	HET	SYNONYMOUS_CODING
SBS	Chr11	17368602	A-T	HET	INTERGENIC
SBS	Chr11	17368603	C-T	HET	INTERGENIC
SBS	Chr12	22652972	G-A	HET	INTRON
SBS	Chr2	10727334	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g18430
SBS	Chr2	12485352	G-A	HOMO	INTRON
SBS	Chr2	13840659	T-C	HET	UTR_3_PRIME
SBS	Chr2	1537019	C-T	HOMO	INTERGENIC
SBS	Chr2	22891942	G-A	HET	INTERGENIC
SBS	Chr2	30945712	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g50660
SBS	Chr3	12445419	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g21780
SBS	Chr3	9863238	T-C	HOMO	INTERGENIC
SBS	Chr4	13638466	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g23880
SBS	Chr4	13859829	G-A	HOMO	INTERGENIC
SBS	Chr4	29508554	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	35284500	T-C	HOMO	INTRON
SBS	Chr5	18021321	C-T	HOMO	INTERGENIC
SBS	Chr5	18032564	C-A	HOMO	INTERGENIC
SBS	Chr6	11512513	G-C	HET	INTERGENIC
SBS	Chr6	15066808	A-G	HOMO	INTRON
SBS	Chr6	3656117	C-T	HET	INTERGENIC
SBS	Chr6	5167072	A-T	HET	INTERGENIC
SBS	Chr7	1065828	A-G	HOMO	INTERGENIC
SBS	Chr7	13203552	C-T	HOMO	INTRON
SBS	Chr7	13683476	C-T	HET	INTERGENIC
SBS	Chr7	14098338	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g24800
SBS	Chr7	25677377	T-A	HET	INTERGENIC
SBS	Chr7	648851	G-A	HOMO	INTERGENIC
SBS	Chr8	5072217	C-T	HOMO	INTERGENIC
SBS	Chr9	4108419	C-G	HET	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	607330	607331	1
Deletion	Chr8	1362006	1362011	5
Deletion	Chr9	1568986	1568995	9	LOC_Os09g03260
Deletion	Chr3	1725637	1727447	1810	LOC_Os03g03830
Deletion	Chr3	1797109	1826660	29551	6
Deletion	Chr4	2291001	2306000	15000	4
Deletion	Chr7	2755138	2755545	407
Deletion	Chr3	3761132	3761135	3	LOC_Os03g07410
Deletion	Chr9	4108413	4108414	1
Deletion	Chr6	5738913	5738927	14
Deletion	Chr3	8645699	8645700	1
Deletion	Chr7	10263664	10263667	3
Deletion	Chr11	10568862	10568876	14
Deletion	Chr2	11779694	11779707	13
Deletion	Chr9	12937982	12937990	8
Deletion	Chr6	13221769	13221772	3
Deletion	Chr11	13292705	13292707	2
Deletion	Chr6	14130157	14130163	6
Deletion	Chr5	15172001	15352000	180000	34
Deletion	Chr11	17942489	17943346	857
Deletion	Chr11	18690315	18690337	22
Deletion	Chr8	19737998	19738028	30
Deletion	Chr7	20953090	20953091	1
Deletion	Chr1	21664683	21664689	6
Deletion	Chr12	22042999	22043002	3	LOC_Os12g36010
Deletion	Chr7	22302137	22302138	1
Deletion	Chr11	23730423	23730424	1
Deletion	Chr4	28739834	28739835	1
Deletion	Chr1	30974767	30974769	2
Deletion	Chr3	31574950	31574959	9

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	14529191	14529194	4
Insertion	Chr11	19595026	19595027	2
Insertion	Chr11	20757463	20757463	1	LOC_Os11g35420
Insertion	Chr12	9585983	9585984	2
Insertion	Chr5	18369178	18369179	2
Insertion	Chr6	23545576	23545578	3

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	16199167	18292133	LOC_Os11g28170
Inversion	Chr7	21471157	21579563	LOC_Os07g35880
Inversion	Chr7	21471170	21579580	LOC_Os07g35880

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	2302908	Chr3	1725643	LOC_Os03g03830
Translocation	Chr4	14621557	Chr3	1727406	LOC_Os03g03830
Translocation	Chr11	16199168	Chr7	2755539	2
Translocation	Chr11	18292134	Chr7	2755138	LOC_Os07g05720
Translocation	Chr11	23702821	Chr10	12884570
Translocation	Chr11	23702824	Chr10	12886467	LOC_Os10g25030

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