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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	155243	T-A	HOMO	SYNONYMOUS_CODING
SBS	Chr1	1622630	C-T	HOMO	INTERGENIC
SBS	Chr1	20791471	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr1	36572017	T-A	HOMO	INTERGENIC
SBS	Chr1	9551170	C-T	HOMO	INTERGENIC
SBS	Chr10	11999998	T-A	HOMO	INTERGENIC
SBS	Chr10	12210183	T-A	HOMO	INTERGENIC
SBS	Chr11	11912077	A-G	HOMO	INTRON
SBS	Chr11	15739419	G-A	HOMO	INTERGENIC
SBS	Chr12	24220188	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g39380
SBS	Chr12	9832336	C-G	HOMO	INTRON
SBS	Chr2	6742199	C-G	HOMO	INTERGENIC
SBS	Chr3	26795638	G-A	HET	INTERGENIC
SBS	Chr4	21867694	G-C	HOMO	UTR_5_PRIME
SBS	Chr4	9045427	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g16630
SBS	Chr5	3252864	T-C	HOMO	INTRON
SBS	Chr5	6424606	C-A	HET	INTERGENIC
SBS	Chr5	6424607	C-A	HET	INTERGENIC
SBS	Chr5	8325892	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr5	8325893	A-T	HOMO	STOP_GAINED	LOC_Os05g14610
SBS	Chr5	8325894	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g14610
SBS	Chr6	22689602	G-T	HET	INTERGENIC
SBS	Chr7	23278270	A-T	HOMO	INTERGENIC
SBS	Chr7	456654	G-A	HOMO	INTRON
SBS	Chr7	4924668	T-A	HET	INTERGENIC
SBS	Chr7	8031221	G-A	HET	INTERGENIC
SBS	Chr8	11260807	T-C	HET	INTERGENIC
SBS	Chr8	13558746	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g22510
SBS	Chr8	13558747	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g22510
SBS	Chr8	24435829	C-A	HOMO	INTERGENIC
SBS	Chr9	12507868	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g20760
SBS	Chr9	12806604	G-C	HOMO	INTERGENIC
SBS	Chr9	3799350	A-G	HOMO	INTRON

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	385045	385046	1
Deletion	Chr1	2065244	2065256	12
Deletion	Chr7	8504551	8504561	10
Deletion	Chr7	12575363	12575365	2
Deletion	Chr9	14679877	14679878	1
Deletion	Chr7	14688965	14688966	1
Deletion	Chr9	15258706	15258708	2
Deletion	Chr5	15870471	15870472	1
Deletion	Chr2	16044179	16044185	6
Deletion	Chr4	16779280	16779282	2
Deletion	Chr6	17186847	17186854	7
Deletion	Chr12	19906942	19906943	1
Deletion	Chr6	27117141	27117142	1	LOC_Os06g44860
Deletion	Chr3	27356953	27356954	1

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	33348704	33348706	3
Insertion	Chr1	39518189	39518189	1
Insertion	Chr1	40482421	40482423	3
Insertion	Chr10	4758486	4758486	1
Insertion	Chr12	16566454	16566454	1
Insertion	Chr12	27136127	27136127	1
Insertion	Chr3	28013990	28013990	1
Insertion	Chr6	19413833	19413834	2
Insertion	Chr8	23966610	23966611	2
Insertion	Chr8	27597840	27597841	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	16929730	17348760	LOC_Os03g30430

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	1192667	Chr1	706569
Translocation	Chr4	3248926	Chr3	16640864

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