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| Mutant Information |
|---|
| Mutant Name | W450-6-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download W450-6-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 31311517 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os01g54420 |
| SBS | Chr10 | 15511575 | T-C | HET | INTERGENIC | |
| SBS | Chr10 | 22050480 | A-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 12976282 | C-G | HET | INTERGENIC | |
| SBS | Chr11 | 14475670 | A-G | HET | SYNONYMOUS_CODING | |
| SBS | Chr11 | 16712651 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 23514657 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os11g39500 |
| SBS | Chr11 | 3477220 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os11g06990 |
| SBS | Chr12 | 17125105 | A-T | HET | INTERGENIC | |
| SBS | Chr12 | 26605487 | A-G | HOMO | INTERGENIC | |
| SBS | Chr2 | 14423397 | A-C | HET | INTERGENIC | |
| SBS | Chr2 | 3356184 | A-G | HOMO | INTERGENIC | |
| SBS | Chr2 | 3484737 | A-G | HOMO | INTERGENIC | |
| SBS | Chr3 | 29337413 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 14082975 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 32523044 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 5224748 | A-T | HOMO | STOP_GAINED | LOC_Os04g09740 |
| SBS | Chr5 | 1086193 | C-A | HET | INTERGENIC | |
| SBS | Chr5 | 15463516 | G-C | HOMO | INTERGENIC | |
| SBS | Chr5 | 1574856 | T-G | HET | INTERGENIC | |
| SBS | Chr7 | 10233112 | A-T | HET | INTERGENIC | |
| SBS | Chr7 | 18842625 | C-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 7636052 | T-G | HOMO | INTERGENIC | |
| SBS | Chr8 | 18178204 | A-G | HET | INTERGENIC | |
| SBS | Chr8 | 21897387 | A-T | HET | INTERGENIC | |
| SBS | Chr8 | 26306390 | T-C | HET | INTERGENIC | |
| SBS | Chr8 | 5887298 | A-T | HOMO | INTRON | |
| SBS | Chr9 | 13354202 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g22040 |
| SBS | Chr9 | 3373398 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os09g06970 |
| SBS | Chr9 | 4991551 | T-C | HET | UTR_3_PRIME |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 3186665 | 3186666 | 1 | LOC_Os04g06130 |
| Deletion | Chr10 | 3478370 | 3478371 | 1 | |
| Deletion | Chr2 | 5513041 | 5513061 | 20 | |
| Deletion | Chr1 | 6307981 | 6307982 | 1 | |
| Deletion | Chr10 | 6516332 | 6516342 | 10 | |
| Deletion | Chr3 | 6582175 | 6582177 | 2 | |
| Deletion | Chr7 | 7072905 | 7072906 | 1 | |
| Deletion | Chr11 | 8781675 | 8781677 | 2 | LOC_Os11g15500 |
| Deletion | Chr2 | 9011706 | 9011716 | 10 | LOC_Os02g15920 |
| Deletion | Chr3 | 9679995 | 9679996 | 1 | |
| Deletion | Chr10 | 11580239 | 11580242 | 3 | |
| Deletion | Chr1 | 15467228 | 15467229 | 1 | |
| Deletion | Chr6 | 15884893 | 15884898 | 5 | |
| Deletion | Chr3 | 16440938 | 16440939 | 1 | |
| Deletion | Chr11 | 17030878 | 17030879 | 1 | |
| Deletion | Chr5 | 17453171 | 17453174 | 3 | LOC_Os05g30140 |
| Deletion | Chr8 | 17871680 | 17871693 | 13 | |
| Deletion | Chr1 | 18209713 | 18209715 | 2 | |
| Deletion | Chr11 | 23515468 | 23515511 | 43 | |
| Deletion | Chr11 | 23633548 | 23633549 | 1 | |
| Deletion | Chr12 | 26673827 | 26673846 | 19 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 22168333 | 22168334 | 2 | |
| Insertion | Chr5 | 15593197 | 15593197 | 1 | |
| Insertion | Chr9 | 11953893 | 11953893 | 1 | |
| Insertion | Chr9 | 15014805 | 15014808 | 4 |
No Inversion
No Translocation