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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2705904	T-A	HET	INTERGENIC
SBS	Chr1	20357861	A-T	HOMO	INTRON
SBS	Chr1	31019070	C-T	HOMO	INTERGENIC
SBS	Chr1	40082942	G-A	HET	INTERGENIC
SBS	Chr2	6310686	G-A	HOMO	INTERGENIC
SBS	Chr2	18775144	C-T	HOMO	INTRON
SBS	Chr2	26553292	T-A	HOMO	INTERGENIC
SBS	Chr3	151486	G-C	HOMO	INTERGENIC
SBS	Chr3	11879457	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g20940
SBS	Chr3	17785048	C-T	HOMO	INTERGENIC
SBS	Chr3	30215260	T-C	HOMO	INTERGENIC
SBS	Chr3	31046113	T-C	HET	INTERGENIC
SBS	Chr4	5088566	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g09500
SBS	Chr4	17456180	A-C	HET	INTERGENIC
SBS	Chr5	12122345	C-T	HOMO	INTERGENIC
SBS	Chr5	22097361	G-A	HET	INTERGENIC
SBS	Chr5	25657993	G-A	HOMO	INTERGENIC
SBS	Chr6	6013802	C-T	HET	INTERGENIC
SBS	Chr6	6959951	C-T	HET	INTERGENIC
SBS	Chr6	14751799	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g25210
SBS	Chr7	11598160	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g19570
SBS	Chr8	1028331	G-A	HET	INTERGENIC
SBS	Chr8	9191549	C-T	HOMO	INTERGENIC
SBS	Chr8	14008929	C-T	HET	INTERGENIC
SBS	Chr8	18808807	C-T	HOMO	INTRON
SBS	Chr8	20745830	C-T	HOMO	INTERGENIC
SBS	Chr9	4076991	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	5709653	G-C	HOMO	INTERGENIC
SBS	Chr9	10518852	A-T	HOMO	INTERGENIC
SBS	Chr9	10826601	T-C	HOMO	INTERGENIC
SBS	Chr10	6905598	G-T	HOMO	INTRON
SBS	Chr10	14915842	C-A	HET	INTERGENIC
SBS	Chr10	21584270	T-C	HET	INTERGENIC
SBS	Chr12	12806271	G-A	HET	INTERGENIC
SBS	Chr12	21582153	G-A	HET	INTERGENIC
SBS	Chr12	22761455	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g37140

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1149886	1149893	7
Deletion	Chr6	3174938	3174949	11
Deletion	Chr4	3277534	3277543	9	LOC_Os04g06280
Deletion	Chr6	3931640	3931642	2
Deletion	Chr1	9524736	9524742	6
Deletion	Chr9	10275614	10275624	10
Deletion	Chr2	12655194	12655200	6
Deletion	Chr10	13273402	13273422	20
Deletion	Chr5	14041631	14041632	1
Deletion	Chr2	14695682	14695684	2
Deletion	Chr12	17623516	17623523	7	LOC_Os12g29560
Deletion	Chr4	17720095	17720097	2
Deletion	Chr3	18489388	18504167	14779	LOC_Os03g32330
Deletion	Chr3	19075727	19075737	10
Deletion	Chr4	19939068	19939077	9
Deletion	Chr2	20254830	20254834	4
Deletion	Chr10	21409323	21409329	6
Deletion	Chr8	21883442	21883444	2
Deletion	Chr1	22569954	22569990	36	LOC_Os01g40010
Deletion	Chr6	23154295	23154296	1
Deletion	Chr7	27853211	27853218	7	LOC_Os07g46620
Deletion	Chr2	28029944	28029946	2
Deletion	Chr3	29957228	29957246	18	LOC_Os03g52180

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr9	10128949	10128949	1	LOC_Os09g16510
Insertion	Chr11	6203339	6203342	4
Insertion	Chr4	31920391	31920392	2
Insertion	Chr11	23843690	23843690	1
Insertion	Chr2	21466774	21466774	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1936012	2204805	LOC_Os10g04620
Inversion	Chr3	34722961	35457685	LOC_Os03g62650

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	12380976	Chr2	14089900
Translocation	Chr3	18495185	Chr2	14089891

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