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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5896774	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	7853789	C-T	HOMO	INTRON
SBS	Chr2	14968834	C-T	HOMO	INTERGENIC
SBS	Chr2	30856444	G-A	HET	INTRON
SBS	Chr3	3345168	G-A	HET	INTERGENIC
SBS	Chr3	12587377	T-A	HOMO	INTERGENIC
SBS	Chr3	16202645	C-A	HET	INTERGENIC
SBS	Chr3	21361517	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g38480
SBS	Chr3	29535744	A-T	HET	INTERGENIC
SBS	Chr4	3052799	T-C	HOMO	INTRON
SBS	Chr4	10748366	A-G	HOMO	INTERGENIC
SBS	Chr4	25588349	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g43250
SBS	Chr4	33916352	A-G	HET	INTERGENIC
SBS	Chr6	15916176	G-A	HET	INTRON
SBS	Chr6	16011590	G-T	HET	SYNONYMOUS_CODING
SBS	Chr7	4271042	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g08340
SBS	Chr7	7922121	A-T	HOMO	INTERGENIC
SBS	Chr7	15058209	C-A	HOMO	INTERGENIC
SBS	Chr7	27581095	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr8	6013088	G-A	HOMO	INTERGENIC
SBS	Chr8	12306393	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g20492
SBS	Chr9	10104510	C-T	HOMO	INTERGENIC
SBS	Chr9	11657582	A-G	HOMO	INTERGENIC
SBS	Chr10	5239500	G-A	HOMO	INTERGENIC
SBS	Chr10	10351588	G-A	HOMO	INTERGENIC
SBS	Chr10	10598027	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g20930
SBS	Chr11	7969526	G-A	HOMO	INTERGENIC
SBS	Chr11	16810800	A-C	HOMO	INTERGENIC
SBS	Chr11	21793418	A-T	HOMO	INTERGENIC
SBS	Chr11	24713774	A-G	HOMO	INTRON

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	3592997	3592999	2
Deletion	Chr7	4271145	4271157	12	LOC_Os07g08340
Deletion	Chr2	7338459	7338465	6
Deletion	Chr9	11635445	11635452	7
Deletion	Chr10	11924314	11924315	1
Deletion	Chr8	13868977	13868978	1	LOC_Os08g23030
Deletion	Chr7	15745537	15745540	3	LOC_Os07g27140
Deletion	Chr6	16728799	16728800	1
Deletion	Chr12	19500573	19500574	1
Deletion	Chr4	20753001	20810000	57000	9
Deletion	Chr7	22028964	22028968	4
Deletion	Chr1	26041634	26041647	13
Deletion	Chr6	26620629	26620631	2
Deletion	Chr4	26914572	26919372	4800	2
Deletion	Chr1	35416615	35416619	4	2
Deletion	Chr3	35448976	35448977	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	20656381	20656383	3
Insertion	Chr2	26690815	26690817	3	LOC_Os02g44130
Insertion	Chr12	3159882	3159882	1
Insertion	Chr3	459719	459719	1
Insertion	Chr4	26251100	26251100	1	LOC_Os04g44320

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	7708571	8036874	LOC_Os03g14210

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	9092769	Chr4	26915852	2
Translocation	Chr10	9092770	Chr4	26915645	2
Translocation	Chr11	19637541	Chr4	26919354	2
Translocation	Chr11	19637557	Chr4	26917885	2
Translocation	Chr4	26915639	Chr3	3154764	2
Translocation	Chr4	34480881	Chr3	2960655

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