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| Mutant Information |
|---|
| Mutant Name | W554-1-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download W554-1-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 20140581 | G-A | HOMO | INTERGENIC | |
| SBS | Chr1 | 22628674 | A-T | HET | INTERGENIC | |
| SBS | Chr1 | 22628675 | A-G | HET | INTERGENIC | |
| SBS | Chr1 | 27814705 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 28182943 | T-C | HOMO | INTERGENIC | |
| SBS | Chr1 | 5745505 | A-T | HET | INTERGENIC | |
| SBS | Chr10 | 10176423 | C-T | HOMO | INTRON | |
| SBS | Chr10 | 1424870 | G-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 1424871 | A-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 23458346 | G-A | HET | INTRON | |
| SBS | Chr11 | 24855463 | G-A | HET | INTRON | |
| SBS | Chr11 | 25099743 | A-T | HET | INTERGENIC | |
| SBS | Chr12 | 14424607 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os12g25120 |
| SBS | Chr12 | 14581206 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 25071939 | C-T | HOMO | INTRON | |
| SBS | Chr12 | 25071940 | C-T | HOMO | INTRON | |
| SBS | Chr2 | 5679715 | C-A | HET | INTERGENIC | |
| SBS | Chr2 | 6975627 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 751472 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g02290 |
| SBS | Chr2 | 9906055 | A-G | HET | INTRON | |
| SBS | Chr3 | 21611277 | G-T | HET | INTERGENIC | |
| SBS | Chr3 | 34187661 | C-T | HOMO | INTRON | |
| SBS | Chr4 | 15169618 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 24998190 | G-A | HOMO | INTRON | |
| SBS | Chr4 | 26433809 | T-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 16088039 | G-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 17016823 | G-C | HET | INTRON | |
| SBS | Chr5 | 19471384 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr5 | 27986881 | T-G | HOMO | INTERGENIC | |
| SBS | Chr7 | 28687544 | G-C | HOMO | INTERGENIC | |
| SBS | Chr8 | 5521514 | T-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g09520 |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 2893171 | 2893174 | 3 | |
| Deletion | Chr12 | 3047610 | 3047634 | 24 | LOC_Os12g06360 |
| Deletion | Chr4 | 3238117 | 3238118 | 1 | |
| Deletion | Chr4 | 3363843 | 3363844 | 1 | |
| Deletion | Chr9 | 5007965 | 5007969 | 4 | |
| Deletion | Chr9 | 9846953 | 9846959 | 6 | |
| Deletion | Chr12 | 11088298 | 11088299 | 1 | |
| Deletion | Chr3 | 15975875 | 15975876 | 1 | |
| Deletion | Chr4 | 16225436 | 16225451 | 15 | |
| Deletion | Chr12 | 19777001 | 20119000 | 342000 | 50 |
| Deletion | Chr5 | 20207132 | 20207447 | 315 | LOC_Os05g34170 |
| Deletion | Chr12 | 25072908 | 25072920 | 12 | |
| Deletion | Chr12 | 25289760 | 25289762 | 2 | |
| Deletion | Chr12 | 25892126 | 25892531 | 405 | |
| Deletion | Chr3 | 27387273 | 27387281 | 8 | |
| Deletion | Chr3 | 35172479 | 35172536 | 57 | |
| Deletion | Chr1 | 40337713 | 40337722 | 9 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 18298484 | 18298489 | 6 | |
| Insertion | Chr5 | 22371921 | 22371921 | 1 | |
| Insertion | Chr6 | 23543748 | 23543750 | 3 | |
| Insertion | Chr9 | 7196896 | 7196897 | 2 |
No Inversion
No Translocation