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Mutant Information

Mutant Name	W596-1-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download W596-1-1 Alignment File
Seed Availability	No
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr4	4782469	A-G	HOMO	INTERGENIC
SBS	Chr4	4783642	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g08776
SBS	Chr4	25083863	C-G	HET	INTRON
SBS	Chr5	13847642	T-A	HET	INTRON
SBS	Chr5	14328799	C-T	HET	INTERGENIC
SBS	Chr5	23760243	C-T	HOMO	INTRON
SBS	Chr6	3351174	A-G	HET	INTERGENIC
SBS	Chr6	21209272	T-A	HOMO	INTRON
SBS	Chr6	27132597	G-A	HET	INTERGENIC
SBS	Chr7	623610	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g02040
SBS	Chr8	12526330	G-C	HET	INTERGENIC
SBS	Chr8	15762199	C-T	HET	INTERGENIC
SBS	Chr9	6161574	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	16695040	G-A	HET	INTERGENIC
SBS	Chr10	15544507	T-A	HET	INTERGENIC
SBS	Chr11	1792050	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr11	13671216	T-G	HOMO	INTERGENIC
SBS	Chr11	28722967	A-C	HET	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	4891001	4926000	35000	6
Deletion	Chr4	5027969	5027982	13
Deletion	Chr3	5198695	5198712	17
Deletion	Chr11	9497310	9497311	1
Deletion	Chr2	11245859	11245863	4
Deletion	Chr12	13262833	13262834	1
Deletion	Chr11	13677971	13677978	7
Deletion	Chr7	14644600	14644602	2
Deletion	Chr8	15570752	15570754	2
Deletion	Chr2	17616582	17616595	13
Deletion	Chr7	18332620	18332622	2
Deletion	Chr7	22507125	22507129	4
Deletion	Chr8	25579001	25766000	187000	31
Deletion	Chr8	26233767	26233776	9	LOC_Os08g41530
Deletion	Chr1	32139492	32139493	1	LOC_Os01g55799
Deletion	Chr1	40480001	40576000	96000	12
Deletion	Chr1	41696496	41696609	113

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr9	22212525	22212526	2	LOC_Os09g38620
Insertion	Chr11	25763332	25763335	4
Insertion	Chr12	621465	621466	2
Insertion	Chr7	21633209	21633209	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	4878620	4925986
Inversion	Chr1	40480110	40820716
Inversion	Chr1	40575252	40820730

No Translocation