Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | W721-2-1 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download W721-2-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 37589662 | A-G | HET | UTR_3_PRIME | |
| SBS | Chr1 | 5131670 | A-T | HOMO | UTR_3_PRIME | |
| SBS | Chr10 | 4935375 | C-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 14024876 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 15707972 | A-C | HET | INTRON | |
| SBS | Chr11 | 19107047 | T-A | HET | INTERGENIC | |
| SBS | Chr11 | 20816751 | T-A | HET | INTERGENIC | |
| SBS | Chr11 | 28865441 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 16735281 | A-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 18313349 | C-A | HET | INTERGENIC | |
| SBS | Chr12 | 4089125 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 18527363 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os02g31020 |
| SBS | Chr2 | 21174827 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 24992344 | A-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 5690432 | T-C | HET | INTERGENIC | |
| SBS | Chr3 | 11224011 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 11217372 | A-G | HET | INTERGENIC | |
| SBS | Chr4 | 14106138 | G-A | HET | INTERGENIC | |
| SBS | Chr5 | 15866419 | A-T | HOMO | UTR_5_PRIME | |
| SBS | Chr5 | 17055059 | C-T | HOMO | INTRON | |
| SBS | Chr5 | 8654875 | C-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 1085086 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 12862310 | G-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 12862312 | C-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 12862316 | A-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 6829450 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g12590 |
| SBS | Chr7 | 2694551 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 12452113 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g20720 |
| SBS | Chr8 | 20218046 | C-T | HET | INTRON |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 1481901 | 1481922 | 21 | |
| Deletion | Chr4 | 11658208 | 11658211 | 3 | LOC_Os04g20774 |
| Deletion | Chr8 | 11860864 | 11860866 | 2 | |
| Deletion | Chr9 | 12006072 | 12006079 | 7 | |
| Deletion | Chr6 | 13412900 | 13412901 | 1 | |
| Deletion | Chr1 | 15323320 | 15323326 | 6 | |
| Deletion | Chr7 | 15365896 | 15365897 | 1 | |
| Deletion | Chr12 | 20229103 | 20229109 | 6 | |
| Deletion | Chr5 | 20563361 | 20563362 | 1 | |
| Deletion | Chr1 | 21274621 | 21274650 | 29 | |
| Deletion | Chr10 | 21978555 | 21978556 | 1 | |
| Deletion | Chr6 | 24450761 | 24450762 | 1 | |
| Deletion | Chr11 | 26607001 | 26632000 | 25000 | 5 |
| Deletion | Chr11 | 26964001 | 26993000 | 29000 | 3 |
| Deletion | Chr6 | 29176159 | 29176189 | 30 | |
| Deletion | Chr2 | 34765133 | 34765137 | 4 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr5 | 16387468 | 16387468 | 1 | |
| Insertion | Chr8 | 26815767 | 26815768 | 2 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 5133826 | 28927801 | |
| Inversion | Chr6 | 14792450 | 14837797 | LOC_Os06g25330 |
| Inversion | Chr11 | 26607264 | 26964308 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 306954 | Chr6 | 14837799 | 2 |
| Translocation | Chr12 | 307636 | Chr4 | 24204089 | 2 |
| Translocation | Chr6 | 14792460 | Chr4 | 24208432 | LOC_Os04g40800 |
| Translocation | Chr11 | 26977171 | Chr8 | 14600681 | 2 |