Search Kitaake

Mutant Information

Mutant Name	FN-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-1 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6361577 C-T Hetero INTERGENIC
SBS Chr1 24690854 T-G Hetero UTR_3_PRIME
SBS Chr1 24690857 A-T Hetero UTR_3_PRIME
SBS Chr1 27085172 C-A Homo INTERGENIC
SBS Chr2 7949667 C-T Hetero INTERGENIC
SBS Chr2 25876069 A-G Hetero INTERGENIC
SBS Chr3 6857943 A-T Hetero SYNONYMOUS_CODING
SBS Chr3 31146705 G-T Hetero INTERGENIC
SBS Chr3 36532624 T-C Hetero SYNONYMOUS_CODING
SBS Chr4 13816581 T-A Hetero INTRON
SBS Chr4 20988455 T-C Hetero INTERGENIC
SBS Chr4 29119464 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g220300
SBS Chr4 36784785 C-T Hetero INTRON
SBS Chr5 17261762 A-G Hetero INTERGENIC
SBS Chr6 11308874 G-C Hetero SYNONYMOUS_CODING
SBS Chr6 16093306 A-G Hetero INTERGENIC
SBS Chr6 21310790 C-T Hetero INTRON
SBS Chr6 23616339 T-C Hetero INTERGENIC
SBS Chr7 25271766 C-A Hetero INTRON
SBS Chr8 8069761 C-G Hetero INTERGENIC
SBS Chr8 26994840 C-T Hetero INTERGENIC
SBS Chr9 8790641 T-A Hetero INTERGENIC
SBS Chr9 9265111 C-T Hetero INTERGENIC
SBS Chr9 18547337 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g146100
SBS Chr11 11194369 G-A Hetero INTERGENIC
SBS Chr12 20777518 A-G Hetero INTRON
SBS Chr12 20777522 A-C Hetero INTRON
SBS Chr12 21059152 T-C Hetero INTERGENIC
SBS Chr12 24527823 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake12g198200

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 12526006 12526161 155
Deletion Chr10 21542465 21542466 1
Deletion Chr4 23861001 23878000 16999
Deletion Chr6 23927685 23927686 1
Deletion Chr3 36211001 36223000 11999 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 30232136 30232144 7

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 22782530 Chr6 5271113 OsKitaake07g195600
Translocation Chr7 22782534 Chr6 5270607 OsKitaake07g195600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6361577	C-T	Hetero	INTERGENIC
SBS	Chr1	24690854	T-G	Hetero	UTR_3_PRIME
SBS	Chr1	24690857	A-T	Hetero	UTR_3_PRIME
SBS	Chr1	27085172	C-A	Homo	INTERGENIC
SBS	Chr2	7949667	C-T	Hetero	INTERGENIC
SBS	Chr2	25876069	A-G	Hetero	INTERGENIC
SBS	Chr3	6857943	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	31146705	G-T	Hetero	INTERGENIC
SBS	Chr3	36532624	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr4	13816581	T-A	Hetero	INTRON
SBS	Chr4	20988455	T-C	Hetero	INTERGENIC
SBS	Chr4	29119464	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g220300
SBS	Chr4	36784785	C-T	Hetero	INTRON
SBS	Chr5	17261762	A-G	Hetero	INTERGENIC
SBS	Chr6	11308874	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr6	16093306	A-G	Hetero	INTERGENIC
SBS	Chr6	21310790	C-T	Hetero	INTRON
SBS	Chr6	23616339	T-C	Hetero	INTERGENIC
SBS	Chr7	25271766	C-A	Hetero	INTRON
SBS	Chr8	8069761	C-G	Hetero	INTERGENIC
SBS	Chr8	26994840	C-T	Hetero	INTERGENIC
SBS	Chr9	8790641	T-A	Hetero	INTERGENIC
SBS	Chr9	9265111	C-T	Hetero	INTERGENIC
SBS	Chr9	18547337	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g146100
SBS	Chr11	11194369	G-A	Hetero	INTERGENIC
SBS	Chr12	20777518	A-G	Hetero	INTRON
SBS	Chr12	20777522	A-C	Hetero	INTRON
SBS	Chr12	21059152	T-C	Hetero	INTERGENIC
SBS	Chr12	24527823	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g198200

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	12526006	12526161	155
Deletion	Chr10	21542465	21542466	1
Deletion	Chr4	23861001	23878000	16999
Deletion	Chr6	23927685	23927686	1
Deletion	Chr3	36211001	36223000	11999	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	22782530	Chr6	5271113	OsKitaake07g195600
Translocation	Chr7	22782534	Chr6	5270607	OsKitaake07g195600

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes