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Mutant Information

Mutant Name	FN-100 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-100 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21325383 A-T Homo INTERGENIC
SBS Chr1 27179644 C-G Hetero INTRON
SBS Chr1 34457532 A-G Homo INTRON
SBS Chr3 7514236 T-C Homo INTERGENIC
SBS Chr3 12294793 A-T Hetero INTERGENIC
SBS Chr3 15786794 G-C Homo INTERGENIC
SBS Chr4 8421511 G-T Hetero INTERGENIC
SBS Chr4 21916114 C-A Homo INTERGENIC
SBS Chr5 26894794 G-A Hetero SPLICE_SITE_REGION
SBS Chr5 26894795 G-A Hetero SPLICE_SITE_REGION
SBS Chr5 26949617 C-A Hetero INTRON
SBS Chr6 27740486 T-C Homo INTERGENIC
SBS Chr7 23788474 C-T Homo NON_SYNONYMOUS_CODING OsKitaake07g209200
SBS Chr8 12381605 T-A Hetero INTERGENIC
SBS Chr9 3372350 G-A Homo INTRON
SBS Chr9 9628402 G-A Homo INTRON
SBS Chr9 9628403 G-A Homo INTRON
SBS Chr9 10787508 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g066900
SBS Chr9 16250603 A-G Hetero INTRON
SBS Chr9 16352076 T-G Hetero INTERGENIC
SBS Chr10 7789538 C-T Hetero INTERGENIC
SBS Chr10 8305856 C-T Hetero INTERGENIC
SBS Chr11 22706971 T-G Hetero INTERGENIC
SBS Chr11 22875146 A-C Hetero INTERGENIC
SBS Chr12 20586232 G-A Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 91246 91247 1
Deletion Chr9 518073 518076 3
Deletion Chr1 6920780 6920782 2
Deletion Chr5 7030216 7030224 8
Deletion Chr9 8837062 8837063 1
Deletion Chr1 10065025 10065029 4
Deletion Chr2 10155357 10155365 8 OsKitaake02g121901
Deletion Chr12 11716620 11716785 165
Deletion Chr8 11717082 11717083 1
Deletion Chr9 14727581 14727586 5
Deletion Chr7 16207981 16207984 3
Deletion Chr2 20350304 20350306 2
Deletion Chr1 25037097 25037098 1 OsKitaake01g242300
Deletion Chr7 26300909 26300910 1
Deletion Chr4 29014692 29014693 1 OsKitaake04g218800
Deletion Chr8 29298701 29299407 706

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 6079 6081 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 18035175 18035445

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 15777354 Chr6 6447348

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21325383	A-T	Homo	INTERGENIC
SBS	Chr1	27179644	C-G	Hetero	INTRON
SBS	Chr1	34457532	A-G	Homo	INTRON
SBS	Chr3	7514236	T-C	Homo	INTERGENIC
SBS	Chr3	12294793	A-T	Hetero	INTERGENIC
SBS	Chr3	15786794	G-C	Homo	INTERGENIC
SBS	Chr4	8421511	G-T	Hetero	INTERGENIC
SBS	Chr4	21916114	C-A	Homo	INTERGENIC
SBS	Chr5	26894794	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr5	26894795	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr5	26949617	C-A	Hetero	INTRON
SBS	Chr6	27740486	T-C	Homo	INTERGENIC
SBS	Chr7	23788474	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g209200
SBS	Chr8	12381605	T-A	Hetero	INTERGENIC
SBS	Chr9	3372350	G-A	Homo	INTRON
SBS	Chr9	9628402	G-A	Homo	INTRON
SBS	Chr9	9628403	G-A	Homo	INTRON
SBS	Chr9	10787508	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g066900
SBS	Chr9	16250603	A-G	Hetero	INTRON
SBS	Chr9	16352076	T-G	Hetero	INTERGENIC
SBS	Chr10	7789538	C-T	Hetero	INTERGENIC
SBS	Chr10	8305856	C-T	Hetero	INTERGENIC
SBS	Chr11	22706971	T-G	Hetero	INTERGENIC
SBS	Chr11	22875146	A-C	Hetero	INTERGENIC
SBS	Chr12	20586232	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	91246	91247	1
Deletion	Chr9	518073	518076	3
Deletion	Chr1	6920780	6920782	2
Deletion	Chr5	7030216	7030224	8
Deletion	Chr9	8837062	8837063	1
Deletion	Chr1	10065025	10065029	4
Deletion	Chr2	10155357	10155365	8	OsKitaake02g121901
Deletion	Chr12	11716620	11716785	165
Deletion	Chr8	11717082	11717083	1
Deletion	Chr9	14727581	14727586	5
Deletion	Chr7	16207981	16207984	3
Deletion	Chr2	20350304	20350306	2
Deletion	Chr1	25037097	25037098	1	OsKitaake01g242300
Deletion	Chr7	26300909	26300910	1
Deletion	Chr4	29014692	29014693	1	OsKitaake04g218800
Deletion	Chr8	29298701	29299407	706

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	18035175	18035445

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes