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Mutant Information

Mutant Name	FN-101 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-101 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 1030356 G-A Homo INTERGENIC
SBS Chr2 1030357 T-A Homo INTERGENIC
SBS Chr2 3891730 A-T Homo INTERGENIC
SBS Chr2 37082083 A-T Hetero INTERGENIC
SBS Chr3 8787271 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g120000
SBS Chr3 18534878 G-T Hetero INTERGENIC
SBS Chr3 18535028 G-T Hetero INTERGENIC
SBS Chr3 24874094 G-A Hetero INTERGENIC
SBS Chr3 31070516 G-A Hetero INTRON
SBS Chr4 27238 T-G Homo INTERGENIC
SBS Chr4 760646 A-C Homo INTERGENIC
SBS Chr4 14450245 G-C Homo INTERGENIC
SBS Chr4 31833230 T-G Homo INTERGENIC
SBS Chr5 10537973 C-A Hetero INTERGENIC
SBS Chr5 28536489 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g266400
SBS Chr6 14686652 A-G Hetero INTERGENIC
SBS Chr6 25198497 G-A Homo INTERGENIC
SBS Chr7 11837346 T-C Hetero INTERGENIC
SBS Chr8 10698148 G-A Hetero INTERGENIC
SBS Chr8 15094444 C-A Hetero INTERGENIC
SBS Chr9 1603222 G-A Hetero INTRON
SBS Chr9 8288253 G-A Hetero INTERGENIC
SBS Chr9 8840508 G-A Hetero INTERGENIC
SBS Chr9 11711626 G-A Hetero INTERGENIC
SBS Chr9 14386347 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g097600
SBS Chr9 14386348 C-T Hetero SYNONYMOUS_CODING
SBS Chr9 16294301 G-T Hetero INTERGENIC
SBS Chr10 4963941 C-T Hetero INTERGENIC
SBS Chr10 7790961 C-T Hetero INTERGENIC
SBS Chr10 9275072 G-A Hetero INTERGENIC
SBS Chr10 10898884 A-T Hetero INTERGENIC
SBS Chr11 2690418 T-G Homo NON_SYNONYMOUS_CODING OsKitaake11g038200
SBS Chr11 7719793 A-C Homo INTERGENIC
SBS Chr11 20432154 C-G Hetero SPLICE_SITE_REGION
SBS Chr12 13250195 T-C Homo INTERGENIC
SBS Chr12 24089197 C-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 513028 513030 2
Deletion Chr4 618327 618331 4 OsKitaake04g004700
Deletion Chr2 1077443 1077444 1
Deletion Chr6 7978428 7978431 3
Deletion Chr1 9859899 9859900 1
Deletion Chr4 10350099 10350100 1
Deletion Chr1 10524656 10524657 1
Deletion Chr7 10622903 10622905 2
Deletion Chr11 13627337 13627339 2
Deletion Chr2 15312986 15312992 6
Deletion Chr7 15716835 15716836 1
Deletion Chr6 17796245 17796246 1
Deletion Chr10 21871378 21871385 7
Deletion Chr7 22130006 22130008 2
Deletion Chr2 26656174 26656185 11
Deletion Chr4 31833331 31833332 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 38319185 38319188 2
Insertion Chr3 7646275 7646278 2
Insertion Chr5 25759113 25759116 2
Insertion Chr9 21465691 21465694 2
Insertion Chr10 9683086 9683089 2
Insertion Chr6 29136797 29136800 2 OsKitaake06g268803

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 18580184 19166196 OsKitaake06g173100
Inversion Chr6 28570715 28592152 2
Inversion Chr6 28592154 29234028 OsKitaake06g262600

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 13470482 Chr3 20119551
Translocation Chr8 13470650 Chr3 20119583
Translocation Chr2 20691963 Chr1 17997911
Translocation Chr11 23778534 Chr6 29234021 OsKitaake11g190300
Translocation Chr11 23778551 Chr6 28570754 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	1030356	G-A	Homo	INTERGENIC
SBS	Chr2	1030357	T-A	Homo	INTERGENIC
SBS	Chr2	3891730	A-T	Homo	INTERGENIC
SBS	Chr2	37082083	A-T	Hetero	INTERGENIC
SBS	Chr3	8787271	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g120000
SBS	Chr3	18534878	G-T	Hetero	INTERGENIC
SBS	Chr3	18535028	G-T	Hetero	INTERGENIC
SBS	Chr3	24874094	G-A	Hetero	INTERGENIC
SBS	Chr3	31070516	G-A	Hetero	INTRON
SBS	Chr4	27238	T-G	Homo	INTERGENIC
SBS	Chr4	760646	A-C	Homo	INTERGENIC
SBS	Chr4	14450245	G-C	Homo	INTERGENIC
SBS	Chr4	31833230	T-G	Homo	INTERGENIC
SBS	Chr5	10537973	C-A	Hetero	INTERGENIC
SBS	Chr5	28536489	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g266400
SBS	Chr6	14686652	A-G	Hetero	INTERGENIC
SBS	Chr6	25198497	G-A	Homo	INTERGENIC
SBS	Chr7	11837346	T-C	Hetero	INTERGENIC
SBS	Chr8	10698148	G-A	Hetero	INTERGENIC
SBS	Chr8	15094444	C-A	Hetero	INTERGENIC
SBS	Chr9	1603222	G-A	Hetero	INTRON
SBS	Chr9	8288253	G-A	Hetero	INTERGENIC
SBS	Chr9	8840508	G-A	Hetero	INTERGENIC
SBS	Chr9	11711626	G-A	Hetero	INTERGENIC
SBS	Chr9	14386347	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g097600
SBS	Chr9	14386348	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	16294301	G-T	Hetero	INTERGENIC
SBS	Chr10	4963941	C-T	Hetero	INTERGENIC
SBS	Chr10	7790961	C-T	Hetero	INTERGENIC
SBS	Chr10	9275072	G-A	Hetero	INTERGENIC
SBS	Chr10	10898884	A-T	Hetero	INTERGENIC
SBS	Chr11	2690418	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g038200
SBS	Chr11	7719793	A-C	Homo	INTERGENIC
SBS	Chr11	20432154	C-G	Hetero	SPLICE_SITE_REGION
SBS	Chr12	13250195	T-C	Homo	INTERGENIC
SBS	Chr12	24089197	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	513028	513030	2
Deletion	Chr4	618327	618331	4	OsKitaake04g004700
Deletion	Chr2	1077443	1077444	1
Deletion	Chr6	7978428	7978431	3
Deletion	Chr1	9859899	9859900	1
Deletion	Chr4	10350099	10350100	1
Deletion	Chr1	10524656	10524657	1
Deletion	Chr7	10622903	10622905	2
Deletion	Chr11	13627337	13627339	2
Deletion	Chr2	15312986	15312992	6
Deletion	Chr7	15716835	15716836	1
Deletion	Chr6	17796245	17796246	1
Deletion	Chr10	21871378	21871385	7
Deletion	Chr7	22130006	22130008	2
Deletion	Chr2	26656174	26656185	11
Deletion	Chr4	31833331	31833332	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	18580184	19166196	OsKitaake06g173100
Inversion	Chr6	28570715	28592152	2
Inversion	Chr6	28592154	29234028	OsKitaake06g262600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes