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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN-185 [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-185 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 19909538 A-T Hetero INTERGENIC
SBS Chr2 21372445 C-T Hetero INTERGENIC
SBS Chr2 26554047 G-T Hetero INTERGENIC
SBS Chr2 34887383 T-A Hetero INTERGENIC
SBS Chr3 22430292 C-T Homo UTR_3_PRIME
SBS Chr4 9447290 G-T Homo INTERGENIC
SBS Chr4 13987216 A-G Homo INTERGENIC
SBS Chr4 32025942 C-T Hetero INTERGENIC
SBS Chr5 6423567 C-T Hetero INTERGENIC
SBS Chr5 9302220 G-C Hetero INTERGENIC
SBS Chr5 14881576 A-C Hetero INTERGENIC
SBS Chr6 24333477 T-A Hetero INTERGENIC
SBS Chr7 6274249 G-A Hetero INTERGENIC
SBS Chr8 605945 C-A Homo INTERGENIC
SBS Chr8 7481419 C-T Homo INTERGENIC
SBS Chr8 22801668 T-C Hetero INTERGENIC
SBS Chr9 3518357 G-A Hetero INTERGENIC
SBS Chr9 13082741 G-T Hetero INTERGENIC
SBS Chr9 13082742 A-T Hetero INTERGENIC
SBS Chr10 6577870 G-A Hetero INTERGENIC
SBS Chr10 14447023 A-T Hetero UTR_3_PRIME
SBS Chr10 18087696 A-T Homo INTERGENIC
SBS Chr11 920145 T-G Homo INTERGENIC
SBS Chr11 1142587 A-T Homo INTERGENIC
SBS Chr11 9144316 G-A Hetero INTRON
SBS Chr11 9144317 T-A Hetero INTRON
SBS Chr11 12690819 A-G Hetero INTERGENIC
SBS Chr11 13781044 C-A Hetero INTERGENIC
SBS Chr11 25129236 C-T Hetero INTRON
SBS Chr11 25957246 C-T Hetero UTR_3_PRIME
SBS Chr12 12337719 A-G Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 21854 21855 1
Deletion Chr11 559402 559407 5
Deletion Chr8 4090638 4090648 10
Deletion Chr3 4499896 4499898 2
Deletion Chr4 5141995 5141996 1
Deletion Chr4 11077905 11077907 2
Deletion Chr8 13924848 13924849 1
Deletion Chr9 16141056 16141058 2
Deletion Chr12 21560604 21560606 2
Deletion Chr7 21608001 21643000 34999 4
Deletion Chr6 24246001 24274000 27999 2
Deletion Chr1 26693454 26693455 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 23509696 23509698 1
Insertion Chr8 5723903 5723906 2
Insertion Chr5 16011110 16011112 1
Insertion Chr6 446 448 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	19909538	A-T	Hetero	INTERGENIC
SBS	Chr2	21372445	C-T	Hetero	INTERGENIC
SBS	Chr2	26554047	G-T	Hetero	INTERGENIC
SBS	Chr2	34887383	T-A	Hetero	INTERGENIC
SBS	Chr3	22430292	C-T	Homo	UTR_3_PRIME
SBS	Chr4	9447290	G-T	Homo	INTERGENIC
SBS	Chr4	13987216	A-G	Homo	INTERGENIC
SBS	Chr4	32025942	C-T	Hetero	INTERGENIC
SBS	Chr5	6423567	C-T	Hetero	INTERGENIC
SBS	Chr5	9302220	G-C	Hetero	INTERGENIC
SBS	Chr5	14881576	A-C	Hetero	INTERGENIC
SBS	Chr6	24333477	T-A	Hetero	INTERGENIC
SBS	Chr7	6274249	G-A	Hetero	INTERGENIC
SBS	Chr8	605945	C-A	Homo	INTERGENIC
SBS	Chr8	7481419	C-T	Homo	INTERGENIC
SBS	Chr8	22801668	T-C	Hetero	INTERGENIC
SBS	Chr9	3518357	G-A	Hetero	INTERGENIC
SBS	Chr9	13082741	G-T	Hetero	INTERGENIC
SBS	Chr9	13082742	A-T	Hetero	INTERGENIC
SBS	Chr10	6577870	G-A	Hetero	INTERGENIC
SBS	Chr10	14447023	A-T	Hetero	UTR_3_PRIME
SBS	Chr10	18087696	A-T	Homo	INTERGENIC
SBS	Chr11	920145	T-G	Homo	INTERGENIC
SBS	Chr11	1142587	A-T	Homo	INTERGENIC
SBS	Chr11	9144316	G-A	Hetero	INTRON
SBS	Chr11	9144317	T-A	Hetero	INTRON
SBS	Chr11	12690819	A-G	Hetero	INTERGENIC
SBS	Chr11	13781044	C-A	Hetero	INTERGENIC
SBS	Chr11	25129236	C-T	Hetero	INTRON
SBS	Chr11	25957246	C-T	Hetero	UTR_3_PRIME
SBS	Chr12	12337719	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	21854	21855	1
Deletion	Chr11	559402	559407	5
Deletion	Chr8	4090638	4090648	10
Deletion	Chr3	4499896	4499898	2
Deletion	Chr4	5141995	5141996	1
Deletion	Chr4	11077905	11077907	2
Deletion	Chr8	13924848	13924849	1
Deletion	Chr9	16141056	16141058	2
Deletion	Chr12	21560604	21560606	2
Deletion	Chr7	21608001	21643000	34999	4
Deletion	Chr6	24246001	24274000	27999	2
Deletion	Chr1	26693454	26693455	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes