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Mutant Information

Mutant Name	FN-257 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-257 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9332305 C-T Hetero INTERGENIC
SBS Chr1 9684714 C-T Homo INTERGENIC
SBS Chr1 22798658 C-T Hetero INTERGENIC
SBS Chr1 25144150 G-A Hetero INTRON
SBS Chr1 33042183 T-A Hetero INTERGENIC
SBS Chr3 16217992 G-T Hetero INTERGENIC
SBS Chr3 19870458 C-T Hetero INTERGENIC
SBS Chr3 37230985 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g417100
SBS Chr4 23291744 G-C Homo INTERGENIC
SBS Chr4 25399128 A-G Homo INTERGENIC
SBS Chr4 36868943 A-T Homo INTERGENIC
SBS Chr5 517993 C-G Hetero INTERGENIC
SBS Chr5 8707491 C-A Hetero INTERGENIC
SBS Chr6 1935042 G-A Hetero INTERGENIC
SBS Chr6 13989677 C-G Hetero INTRON
SBS Chr6 18346387 C-T Hetero INTERGENIC
SBS Chr6 29094434 T-G Hetero INTRON
SBS Chr7 1850922 C-G Homo NON_SYNONYMOUS_CODING OsKitaake07g025600
SBS Chr7 2871144 A-G Homo INTERGENIC
SBS Chr7 4996108 A-T Homo INTERGENIC
SBS Chr7 16868870 T-C Homo INTERGENIC
SBS Chr8 13824947 T-C Homo INTERGENIC
SBS Chr12 13833619 A-G Hetero INTERGENIC
SBS Chr12 18481515 A-G Hetero INTERGENIC
SBS Chr12 24323110 T-G Homo INTERGENIC
SBS Chr12 26484198 C-T Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 908525 908537 12 OsKitaake06g009800
Deletion Chr9 7476686 7476687 1
Deletion Chr12 7584050 7584202 152
Deletion Chr2 10001001 10029000 27999 3
Deletion Chr8 10683908 10683912 4
Deletion Chr5 10869001 11164000 294999 13
Deletion Chr3 11907387 11907389 2
Deletion Chr7 12816591 12816592 1
Deletion Chr2 13422277 13422280 3
Deletion Chr8 17178448 17178460 12
Deletion Chr2 21702324 21702326 2 OsKitaake02g210520
Deletion Chr7 22131359 22131364 5
Deletion Chr4 23490685 23490692 7
Deletion Chr1 24602667 24602669 2 OsKitaake01g237700
Deletion Chr8 25005453 25005454 1
Deletion Chr6 26818878 26818880 2
Deletion Chr2 35002001 35061000 58999 12
Deletion Chr2 37142052 37142057 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 23067316 23067319 2
Insertion Chr2 10324700 10324702 1

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 8363997 Chr7 16872183 OsKitaake12g086600
Translocation Chr5 11168054 Chr1 4741851 OsKitaake01g063208
Translocation Chr7 16609424 Chr5 11164322 OsKitaake07g136550

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9332305	C-T	Hetero	INTERGENIC
SBS	Chr1	9684714	C-T	Homo	INTERGENIC
SBS	Chr1	22798658	C-T	Hetero	INTERGENIC
SBS	Chr1	25144150	G-A	Hetero	INTRON
SBS	Chr1	33042183	T-A	Hetero	INTERGENIC
SBS	Chr3	16217992	G-T	Hetero	INTERGENIC
SBS	Chr3	19870458	C-T	Hetero	INTERGENIC
SBS	Chr3	37230985	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g417100
SBS	Chr4	23291744	G-C	Homo	INTERGENIC
SBS	Chr4	25399128	A-G	Homo	INTERGENIC
SBS	Chr4	36868943	A-T	Homo	INTERGENIC
SBS	Chr5	517993	C-G	Hetero	INTERGENIC
SBS	Chr5	8707491	C-A	Hetero	INTERGENIC
SBS	Chr6	1935042	G-A	Hetero	INTERGENIC
SBS	Chr6	13989677	C-G	Hetero	INTRON
SBS	Chr6	18346387	C-T	Hetero	INTERGENIC
SBS	Chr6	29094434	T-G	Hetero	INTRON
SBS	Chr7	1850922	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g025600
SBS	Chr7	2871144	A-G	Homo	INTERGENIC
SBS	Chr7	4996108	A-T	Homo	INTERGENIC
SBS	Chr7	16868870	T-C	Homo	INTERGENIC
SBS	Chr8	13824947	T-C	Homo	INTERGENIC
SBS	Chr12	13833619	A-G	Hetero	INTERGENIC
SBS	Chr12	18481515	A-G	Hetero	INTERGENIC
SBS	Chr12	24323110	T-G	Homo	INTERGENIC
SBS	Chr12	26484198	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	908525	908537	12	OsKitaake06g009800
Deletion	Chr9	7476686	7476687	1
Deletion	Chr12	7584050	7584202	152
Deletion	Chr2	10001001	10029000	27999	3
Deletion	Chr8	10683908	10683912	4
Deletion	Chr5	10869001	11164000	294999	13
Deletion	Chr3	11907387	11907389	2
Deletion	Chr7	12816591	12816592	1
Deletion	Chr2	13422277	13422280	3
Deletion	Chr8	17178448	17178460	12
Deletion	Chr2	21702324	21702326	2	OsKitaake02g210520
Deletion	Chr7	22131359	22131364	5
Deletion	Chr4	23490685	23490692	7
Deletion	Chr1	24602667	24602669	2	OsKitaake01g237700
Deletion	Chr8	25005453	25005454	1
Deletion	Chr6	26818878	26818880	2
Deletion	Chr2	35002001	35061000	58999	12
Deletion	Chr2	37142052	37142057	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	8363997	Chr7	16872183	OsKitaake12g086600
Translocation	Chr5	11168054	Chr1	4741851	OsKitaake01g063208
Translocation	Chr7	16609424	Chr5	11164322	OsKitaake07g136550

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes