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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN-304 [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-304 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6819115 G-T Homo NON_SYNONYMOUS_CODING OsKitaake01g086100
SBS Chr1 42003147 G-C Hetero INTERGENIC
SBS Chr1 42642187 T-G Hetero INTRON
SBS Chr2 5282610 A-G Homo INTERGENIC
SBS Chr2 24514908 C-T Hetero INTERGENIC
SBS Chr2 25056427 C-A Hetero INTERGENIC
SBS Chr3 2055380 A-T Hetero INTERGENIC
SBS Chr3 8049850 C-T Homo NON_SYNONYMOUS_CODING OsKitaake03g111400
SBS Chr3 31727653 G-A Hetero INTERGENIC
SBS Chr4 28975397 C-T Homo INTERGENIC
SBS Chr5 10155256 G-T Hetero INTERGENIC
SBS Chr5 10155257 A-T Hetero INTERGENIC
SBS Chr5 12175571 T-G Hetero INTERGENIC
SBS Chr5 17552521 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g134500
SBS Chr9 2510432 C-G Homo INTERGENIC
SBS Chr9 15731107 C-A Hetero UTR_3_PRIME
SBS Chr10 7478841 A-C Hetero INTERGENIC
SBS Chr10 11119445 C-T Hetero INTERGENIC
SBS Chr10 16381857 G-A Hetero INTERGENIC
SBS Chr10 16734771 G-A Hetero INTERGENIC
SBS Chr11 10315953 G-T Hetero INTERGENIC
SBS Chr11 16213166 A-T Hetero INTERGENIC
SBS Chr11 20596616 G-A Hetero INTERGENIC
SBS Chr11 21971037 T-C Hetero INTERGENIC
SBS Chr12 14032184 C-A Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1440863 1440865 2
Deletion Chr3 3731098 3731099 1
Deletion Chr3 8152249 8152340 91
Deletion Chr6 10252991 10252995 4
Deletion Chr12 11707981 11708144 163
Deletion Chr7 11922796 11922807 11
Deletion Chr12 13347561 13347571 10
Deletion Chr1 13684134 13684135 1
Deletion Chr12 14586001 14599000 12999 2
Deletion Chr4 17595665 17595666 1
Deletion Chr4 30978128 30978130 2
Deletion Chr2 33092238 33092239 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 1663521 1663524 2
Insertion Chr12 11697894 11697897 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 3629407 3718749 OsKitaake07g047900
Inversion Chr11 6545416 6961679
Inversion Chr11 6545418 6961684
Inversion Chr11 12265438 12278698 OsKitaake11g112900
Inversion Chr11 12265453 12278697 OsKitaake11g112900
Inversion Chr12 14586152 14609952 OsKitaake12g116800
Inversion Chr12 14599576 14609960

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 13488456 Chr7 3718749 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6819115	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g086100
SBS	Chr1	42003147	G-C	Hetero	INTERGENIC
SBS	Chr1	42642187	T-G	Hetero	INTRON
SBS	Chr2	5282610	A-G	Homo	INTERGENIC
SBS	Chr2	24514908	C-T	Hetero	INTERGENIC
SBS	Chr2	25056427	C-A	Hetero	INTERGENIC
SBS	Chr3	2055380	A-T	Hetero	INTERGENIC
SBS	Chr3	8049850	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g111400
SBS	Chr3	31727653	G-A	Hetero	INTERGENIC
SBS	Chr4	28975397	C-T	Homo	INTERGENIC
SBS	Chr5	10155256	G-T	Hetero	INTERGENIC
SBS	Chr5	10155257	A-T	Hetero	INTERGENIC
SBS	Chr5	12175571	T-G	Hetero	INTERGENIC
SBS	Chr5	17552521	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g134500
SBS	Chr9	2510432	C-G	Homo	INTERGENIC
SBS	Chr9	15731107	C-A	Hetero	UTR_3_PRIME
SBS	Chr10	7478841	A-C	Hetero	INTERGENIC
SBS	Chr10	11119445	C-T	Hetero	INTERGENIC
SBS	Chr10	16381857	G-A	Hetero	INTERGENIC
SBS	Chr10	16734771	G-A	Hetero	INTERGENIC
SBS	Chr11	10315953	G-T	Hetero	INTERGENIC
SBS	Chr11	16213166	A-T	Hetero	INTERGENIC
SBS	Chr11	20596616	G-A	Hetero	INTERGENIC
SBS	Chr11	21971037	T-C	Hetero	INTERGENIC
SBS	Chr12	14032184	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1440863	1440865	2
Deletion	Chr3	3731098	3731099	1
Deletion	Chr3	8152249	8152340	91
Deletion	Chr6	10252991	10252995	4
Deletion	Chr12	11707981	11708144	163
Deletion	Chr7	11922796	11922807	11
Deletion	Chr12	13347561	13347571	10
Deletion	Chr1	13684134	13684135	1
Deletion	Chr12	14586001	14599000	12999	2
Deletion	Chr4	17595665	17595666	1
Deletion	Chr4	30978128	30978130	2
Deletion	Chr2	33092238	33092239	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	3629407	3718749	OsKitaake07g047900
Inversion	Chr11	6545416	6961679
Inversion	Chr11	6545418	6961684
Inversion	Chr11	12265438	12278698	OsKitaake11g112900
Inversion	Chr11	12265453	12278697	OsKitaake11g112900
Inversion	Chr12	14586152	14609952	OsKitaake12g116800
Inversion	Chr12	14599576	14609960

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes