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Mutant Information

Mutant Name	FN-313 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-313 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 25242698 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g244400
SBS Chr1 28951620 G-A Hetero INTERGENIC
SBS Chr1 40201631 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g436300
SBS Chr2 14836046 T-C Hetero INTERGENIC
SBS Chr2 21302777 A-C Hetero INTERGENIC
SBS Chr2 27022244 T-G Homo INTERGENIC
SBS Chr3 4034927 G-A Hetero INTERGENIC
SBS Chr3 7043824 T-C Hetero INTRON
SBS Chr3 26569121 G-T Homo INTERGENIC
SBS Chr3 32833044 A-T Homo INTERGENIC
SBS Chr4 9798493 A-G Hetero INTERGENIC
SBS Chr4 11317004 C-T Hetero INTERGENIC
SBS Chr4 18469793 C-T Hetero INTERGENIC
SBS Chr4 19949412 A-G Hetero INTERGENIC
SBS Chr4 30794431 T-C Homo NON_SYNONYMOUS_CODING OsKitaake04g238000
SBS Chr5 7037547 C-T Hetero INTERGENIC
SBS Chr5 9029861 C-T Hetero INTERGENIC
SBS Chr5 12128001 A-G Hetero INTERGENIC
SBS Chr5 19512167 G-A Hetero INTERGENIC
SBS Chr5 22588775 C-T Homo INTERGENIC
SBS Chr6 3556930 T-A Hetero INTERGENIC
SBS Chr7 18924593 T-C Hetero INTERGENIC
SBS Chr7 23972006 T-G Homo UTR_5_PRIME
SBS Chr7 25002096 C-A Homo INTERGENIC
SBS Chr7 27214336 C-G Hetero INTERGENIC
SBS Chr8 21119736 A-G Hetero UTR_3_PRIME
SBS Chr10 16162500 C-G Homo NON_SYNONYMOUS_CODING OsKitaake10g108300
SBS Chr10 19242321 A-G Hetero INTRON
SBS Chr11 7324005 T-C Homo INTERGENIC
SBS Chr11 19982832 G-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 63633 63634 1
Deletion Chr2 4651154 4651155 1 OsKitaake02g064300
Deletion Chr8 4735929 4736054 125
Deletion Chr5 15429295 15429297 2
Deletion Chr3 17358936 17359015 79
Deletion Chr9 19803120 19803257 137
Deletion Chr4 22418765 22418766 1
Deletion Chr3 25986309 25986310 1
Deletion Chr5 30263952 30264306 354
Deletion Chr1 30771916 30771917 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25242698	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g244400
SBS	Chr1	28951620	G-A	Hetero	INTERGENIC
SBS	Chr1	40201631	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g436300
SBS	Chr2	14836046	T-C	Hetero	INTERGENIC
SBS	Chr2	21302777	A-C	Hetero	INTERGENIC
SBS	Chr2	27022244	T-G	Homo	INTERGENIC
SBS	Chr3	4034927	G-A	Hetero	INTERGENIC
SBS	Chr3	7043824	T-C	Hetero	INTRON
SBS	Chr3	26569121	G-T	Homo	INTERGENIC
SBS	Chr3	32833044	A-T	Homo	INTERGENIC
SBS	Chr4	9798493	A-G	Hetero	INTERGENIC
SBS	Chr4	11317004	C-T	Hetero	INTERGENIC
SBS	Chr4	18469793	C-T	Hetero	INTERGENIC
SBS	Chr4	19949412	A-G	Hetero	INTERGENIC
SBS	Chr4	30794431	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g238000
SBS	Chr5	7037547	C-T	Hetero	INTERGENIC
SBS	Chr5	9029861	C-T	Hetero	INTERGENIC
SBS	Chr5	12128001	A-G	Hetero	INTERGENIC
SBS	Chr5	19512167	G-A	Hetero	INTERGENIC
SBS	Chr5	22588775	C-T	Homo	INTERGENIC
SBS	Chr6	3556930	T-A	Hetero	INTERGENIC
SBS	Chr7	18924593	T-C	Hetero	INTERGENIC
SBS	Chr7	23972006	T-G	Homo	UTR_5_PRIME
SBS	Chr7	25002096	C-A	Homo	INTERGENIC
SBS	Chr7	27214336	C-G	Hetero	INTERGENIC
SBS	Chr8	21119736	A-G	Hetero	UTR_3_PRIME
SBS	Chr10	16162500	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g108300
SBS	Chr10	19242321	A-G	Hetero	INTRON
SBS	Chr11	7324005	T-C	Homo	INTERGENIC
SBS	Chr11	19982832	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	63633	63634	1
Deletion	Chr2	4651154	4651155	1	OsKitaake02g064300
Deletion	Chr8	4735929	4736054	125
Deletion	Chr5	15429295	15429297	2
Deletion	Chr3	17358936	17359015	79
Deletion	Chr9	19803120	19803257	137
Deletion	Chr4	22418765	22418766	1
Deletion	Chr3	25986309	25986310	1
Deletion	Chr5	30263952	30264306	354
Deletion	Chr1	30771916	30771917	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes