Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN-327 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN-327 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Phenotype |
|
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 43524012 | G-A | Homo | INTRON | |
| SBS | Chr3 | 20614135 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 25199565 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 18533749 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 19553537 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 21412841 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 26983991 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g196000 |
| SBS | Chr4 | 32968633 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 5059844 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 11596181 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 6942239 | A-C | Homo | INTERGENIC | |
| SBS | Chr6 | 16105552 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 16105554 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 23778787 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr7 | 12802543 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 17891291 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 6514012 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 7738229 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 5093839 | T-A | Hetero | INTRON | |
| SBS | Chr9 | 6900383 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 17389053 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake09g130600 |
| SBS | Chr10 | 1963501 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 3598758 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 29383255 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g240200 |
| SBS | Chr12 | 13144959 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 13144960 | G-T | Homo | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 9480430 | 9480602 | 172 | |
| Deletion | Chr4 | 11011298 | 11011309 | 11 | |
| Deletion | Chr11 | 11833001 | 11951000 | 117999 | 4 |
| Deletion | Chr2 | 13837961 | 13837963 | 2 | |
| Deletion | Chr6 | 16560977 | 16560980 | 3 | |
| Deletion | Chr8 | 18151806 | 18151807 | 1 | |
| Deletion | Chr4 | 19490885 | 19490887 | 2 | OsKitaake04g100200 |
| Deletion | Chr2 | 19801001 | 19888000 | 86999 | 12 |
| Deletion | Chr4 | 20202830 | 20202832 | 2 | |
| Deletion | Chr5 | 20813261 | 20813263 | 2 | |
| Deletion | Chr8 | 22916654 | 22916655 | 1 | |
| Deletion | Chr2 | 23470473 | 23470474 | 1 | |
| Deletion | Chr3 | 27376758 | 27376759 | 1 | OsKitaake03g282400 |
| Deletion | Chr8 | 27690724 | 27690725 | 1 | |
| Deletion | Chr8 | 28301417 | 28301423 | 6 | |
| Deletion | Chr8 | 29298701 | 29299407 | 706 | |
| Deletion | Chr1 | 31082001 | 31122000 | 39999 | 5 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 24265846 | 24265849 | 2 | |
| Insertion | Chr9 | 21222090 | 21222093 | 2 | |
| Insertion | Chr12 | 25564303 | 25564306 | 2 | |
| Insertion | Chr11 | 9785051 | 9785055 | 3 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 6505236 | 6511070 | |
| Inversion | Chr8 | 6505334 | 6511073 | |
| Inversion | Chr1 | 31089144 | 31250501 | OsKitaake01g312700 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 3953786 | Chr11 | 11947517 | OsKitaake12g054000 |
| Translocation | Chr12 | 3953795 | Chr11 | 11948022 | OsKitaake12g054000 |