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Mutant Information

Mutant Name	FN-341 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-341 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1434964 C-A Homo INTERGENIC
SBS Chr1 29709717 G-A Hetero INTERGENIC
SBS Chr1 37061538 A-T Hetero INTRON
SBS Chr1 39365076 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g424600
SBS Chr1 39365077 T-A Hetero SYNONYMOUS_CODING
SBS Chr2 655240 G-A Hetero INTERGENIC
SBS Chr2 4739550 T-G Hetero INTRON
SBS Chr2 5311562 T-C Hetero SYNONYMOUS_CODING
SBS Chr2 6508081 T-C Hetero INTERGENIC
SBS Chr2 16184205 G-C Hetero INTERGENIC
SBS Chr2 28241915 C-T Homo INTERGENIC
SBS Chr3 2856649 G-A Hetero INTERGENIC
SBS Chr3 7462626 A-G Hetero INTERGENIC
SBS Chr3 22563583 T-C Hetero INTERGENIC
SBS Chr4 2414605 G-A Homo INTERGENIC
SBS Chr4 5933432 T-C Homo INTRON
SBS Chr4 21472733 C-A Hetero INTERGENIC
SBS Chr4 34997322 G-T Hetero INTERGENIC
SBS Chr5 12208052 C-A Homo INTERGENIC
SBS Chr6 2663243 C-T Homo INTERGENIC
SBS Chr7 8011949 C-T Homo INTERGENIC
SBS Chr7 16372000 G-A Homo INTERGENIC
SBS Chr7 18099195 A-G Hetero INTERGENIC
SBS Chr8 24475640 A-G Hetero UTR_5_PRIME
SBS Chr9 17765710 C-T Hetero INTERGENIC
SBS Chr11 20440367 T-A Hetero INTERGENIC
SBS Chr12 2773729 T-C Hetero INTERGENIC
SBS Chr12 22981601 T-C Homo INTERGENIC
SBS Chr12 24817300 T-A Homo INTERGENIC

Deletions: 30

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1498802 1498803 1 OsKitaake12g022400
Deletion Chr3 2669968 2669976 8
Deletion Chr9 3277609 3277611 2
Deletion Chr8 4263660 4263677 17
Deletion Chr2 5318362 5318374 12 OsKitaake02g073000
Deletion Chr3 7110908 7110910 2
Deletion Chr7 8264001 8279000 14999 2
Deletion Chr10 8777424 8777427 3
Deletion Chr2 9414025 9414034 9
Deletion Chr10 9416045 9416048 3
Deletion Chr7 11957940 11957946 6
Deletion Chr6 12300411 12300413 2
Deletion Chr5 14262001 14316000 53999 3
Deletion Chr6 15017340 15017349 9
Deletion Chr6 15788299 15788304 5
Deletion Chr10 18160428 18160438 10
Deletion Chr12 18999546 18999548 2
Deletion Chr10 19879690 19879692 2
Deletion Chr2 22219940 22219941 1
Deletion Chr8 22628191 22628195 4
Deletion Chr10 23208984 23208985 1
Deletion Chr8 24184946 24184948 2 OsKitaake08g186700
Deletion Chr1 24835056 24835077 21
Deletion Chr11 28691542 28691551 9
Deletion Chr4 30188001 30558000 369999 33
Deletion Chr4 30562001 30662000 99999 9
Deletion Chr4 31250810 31250811 1
Deletion Chr4 32723341 32723346 5 OsKitaake04g263700
Deletion Chr4 32961799 32961804 5
Deletion Chr4 33280989 33280990 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 40801569 40801571 1
Insertion Chr5 20291898 20291901 2
Insertion Chr12 16545651 16545655 3

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 21752030 21768129

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 21752476 Chr3 1015355

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1434964	C-A	Homo	INTERGENIC
SBS	Chr1	29709717	G-A	Hetero	INTERGENIC
SBS	Chr1	37061538	A-T	Hetero	INTRON
SBS	Chr1	39365076	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g424600
SBS	Chr1	39365077	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	655240	G-A	Hetero	INTERGENIC
SBS	Chr2	4739550	T-G	Hetero	INTRON
SBS	Chr2	5311562	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	6508081	T-C	Hetero	INTERGENIC
SBS	Chr2	16184205	G-C	Hetero	INTERGENIC
SBS	Chr2	28241915	C-T	Homo	INTERGENIC
SBS	Chr3	2856649	G-A	Hetero	INTERGENIC
SBS	Chr3	7462626	A-G	Hetero	INTERGENIC
SBS	Chr3	22563583	T-C	Hetero	INTERGENIC
SBS	Chr4	2414605	G-A	Homo	INTERGENIC
SBS	Chr4	5933432	T-C	Homo	INTRON
SBS	Chr4	21472733	C-A	Hetero	INTERGENIC
SBS	Chr4	34997322	G-T	Hetero	INTERGENIC
SBS	Chr5	12208052	C-A	Homo	INTERGENIC
SBS	Chr6	2663243	C-T	Homo	INTERGENIC
SBS	Chr7	8011949	C-T	Homo	INTERGENIC
SBS	Chr7	16372000	G-A	Homo	INTERGENIC
SBS	Chr7	18099195	A-G	Hetero	INTERGENIC
SBS	Chr8	24475640	A-G	Hetero	UTR_5_PRIME
SBS	Chr9	17765710	C-T	Hetero	INTERGENIC
SBS	Chr11	20440367	T-A	Hetero	INTERGENIC
SBS	Chr12	2773729	T-C	Hetero	INTERGENIC
SBS	Chr12	22981601	T-C	Homo	INTERGENIC
SBS	Chr12	24817300	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1498802	1498803	1	OsKitaake12g022400
Deletion	Chr3	2669968	2669976	8
Deletion	Chr9	3277609	3277611	2
Deletion	Chr8	4263660	4263677	17
Deletion	Chr2	5318362	5318374	12	OsKitaake02g073000
Deletion	Chr3	7110908	7110910	2
Deletion	Chr7	8264001	8279000	14999	2
Deletion	Chr10	8777424	8777427	3
Deletion	Chr2	9414025	9414034	9
Deletion	Chr10	9416045	9416048	3
Deletion	Chr7	11957940	11957946	6
Deletion	Chr6	12300411	12300413	2
Deletion	Chr5	14262001	14316000	53999	3
Deletion	Chr6	15017340	15017349	9
Deletion	Chr6	15788299	15788304	5
Deletion	Chr10	18160428	18160438	10
Deletion	Chr12	18999546	18999548	2
Deletion	Chr10	19879690	19879692	2
Deletion	Chr2	22219940	22219941	1
Deletion	Chr8	22628191	22628195	4
Deletion	Chr10	23208984	23208985	1
Deletion	Chr8	24184946	24184948	2	OsKitaake08g186700
Deletion	Chr1	24835056	24835077	21
Deletion	Chr11	28691542	28691551	9
Deletion	Chr4	30188001	30558000	369999	33
Deletion	Chr4	30562001	30662000	99999	9
Deletion	Chr4	31250810	31250811	1
Deletion	Chr4	32723341	32723346	5	OsKitaake04g263700
Deletion	Chr4	32961799	32961804	5
Deletion	Chr4	33280989	33280990	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	21752030	21768129

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes