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Mutant Information

Mutant Name	FN-362 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-362 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11148271 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g137000
SBS Chr1 11148272 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g137000
SBS Chr1 31431060 A-G Hetero INTRON
SBS Chr1 37526011 C-T Hetero INTRON
SBS Chr1 40478731 G-T Hetero INTRON
SBS Chr1 40478734 G-T Hetero INTRON
SBS Chr1 40575895 C-T Hetero UTR_3_PRIME
SBS Chr1 40577505 A-T Hetero UTR_3_PRIME
SBS Chr1 41814792 G-T Hetero INTRON
SBS Chr2 7234683 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g097000
SBS Chr2 18305407 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g181600
SBS Chr3 6633919 G-A Homo INTRON
SBS Chr3 7306189 C-T Homo INTRON
SBS Chr3 14637200 C-T Homo INTERGENIC
SBS Chr3 18138760 G-A Hetero INTERGENIC
SBS Chr4 10139351 C-T Homo INTERGENIC
SBS Chr4 19315165 C-T Homo INTERGENIC
SBS Chr5 2219375 A-G Hetero UTR_3_PRIME
SBS Chr5 5701281 C-T Hetero INTERGENIC
SBS Chr5 8010478 C-G Hetero INTERGENIC
SBS Chr5 23974295 G-T Homo INTERGENIC
SBS Chr5 24569638 C-A Homo INTERGENIC
SBS Chr6 11693577 G-A Hetero INTERGENIC
SBS Chr6 21154970 C-T Hetero INTERGENIC
SBS Chr7 2710594 G-T Homo INTERGENIC
SBS Chr8 27152162 A-G Hetero UTR_5_PRIME
SBS Chr9 111519 T-A Hetero INTRON
SBS Chr9 4948789 T-C Hetero INTERGENIC
SBS Chr9 18632289 G-A Hetero INTERGENIC
SBS Chr10 8095048 T-G Hetero INTERGENIC
SBS Chr10 9648893 G-A Hetero INTERGENIC
SBS Chr10 11978582 A-G Hetero INTERGENIC
SBS Chr10 23846722 G-A Hetero INTERGENIC
SBS Chr11 24214684 G-T Hetero INTERGENIC
SBS Chr11 24807073 T-A Hetero INTERGENIC
SBS Chr11 29003842 G-A Hetero INTERGENIC
SBS Chr12 12209399 G-A Hetero INTERGENIC
SBS Chr12 12921667 C-T Hetero INTERGENIC
SBS Chr12 18562720 T-C Hetero UTR_5_PRIME
SBS Chr12 22963048 T-C Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 457025 457035 10 OsKitaake11g004600
Deletion Chr5 594813 594823 10
Deletion Chr9 4700843 4700850 7
Deletion Chr5 6795001 6955000 159999 13
Deletion Chr5 6959001 7670000 710999 68
Deletion Chr11 8938431 8938443 12
Deletion Chr4 9278146 9278148 2 OsKitaake04g048000
Deletion Chr9 10429102 10429104 2 OsKitaake09g065100
Deletion Chr4 17999098 17999100 2
Deletion Chr3 20252898 20252899 1
Deletion Chr5 21871001 21934000 62999 OsKitaake05g178800
Deletion Chr1 21934218 21934236 18
Deletion Chr11 22558762 22558764 2
Deletion Chr8 22649762 22649764 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 35509979 35509984 4
Insertion Chr12 26049535 26049537 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 5853946 6794753
Inversion Chr6 22106018 22121526

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 19362780 Chr5 6181624 OsKitaake07g156900
Translocation Chr10 23028953 Chr4 28601249 2
Translocation Chr10 23028964 Chr4 28643885 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11148271	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g137000
SBS	Chr1	11148272	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g137000
SBS	Chr1	31431060	A-G	Hetero	INTRON
SBS	Chr1	37526011	C-T	Hetero	INTRON
SBS	Chr1	40478731	G-T	Hetero	INTRON
SBS	Chr1	40478734	G-T	Hetero	INTRON
SBS	Chr1	40575895	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	40577505	A-T	Hetero	UTR_3_PRIME
SBS	Chr1	41814792	G-T	Hetero	INTRON
SBS	Chr2	7234683	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g097000
SBS	Chr2	18305407	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g181600
SBS	Chr3	6633919	G-A	Homo	INTRON
SBS	Chr3	7306189	C-T	Homo	INTRON
SBS	Chr3	14637200	C-T	Homo	INTERGENIC
SBS	Chr3	18138760	G-A	Hetero	INTERGENIC
SBS	Chr4	10139351	C-T	Homo	INTERGENIC
SBS	Chr4	19315165	C-T	Homo	INTERGENIC
SBS	Chr5	2219375	A-G	Hetero	UTR_3_PRIME
SBS	Chr5	5701281	C-T	Hetero	INTERGENIC
SBS	Chr5	8010478	C-G	Hetero	INTERGENIC
SBS	Chr5	23974295	G-T	Homo	INTERGENIC
SBS	Chr5	24569638	C-A	Homo	INTERGENIC
SBS	Chr6	11693577	G-A	Hetero	INTERGENIC
SBS	Chr6	21154970	C-T	Hetero	INTERGENIC
SBS	Chr7	2710594	G-T	Homo	INTERGENIC
SBS	Chr8	27152162	A-G	Hetero	UTR_5_PRIME
SBS	Chr9	111519	T-A	Hetero	INTRON
SBS	Chr9	4948789	T-C	Hetero	INTERGENIC
SBS	Chr9	18632289	G-A	Hetero	INTERGENIC
SBS	Chr10	8095048	T-G	Hetero	INTERGENIC
SBS	Chr10	9648893	G-A	Hetero	INTERGENIC
SBS	Chr10	11978582	A-G	Hetero	INTERGENIC
SBS	Chr10	23846722	G-A	Hetero	INTERGENIC
SBS	Chr11	24214684	G-T	Hetero	INTERGENIC
SBS	Chr11	24807073	T-A	Hetero	INTERGENIC
SBS	Chr11	29003842	G-A	Hetero	INTERGENIC
SBS	Chr12	12209399	G-A	Hetero	INTERGENIC
SBS	Chr12	12921667	C-T	Hetero	INTERGENIC
SBS	Chr12	18562720	T-C	Hetero	UTR_5_PRIME
SBS	Chr12	22963048	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	457025	457035	10	OsKitaake11g004600
Deletion	Chr5	594813	594823	10
Deletion	Chr9	4700843	4700850	7
Deletion	Chr5	6795001	6955000	159999	13
Deletion	Chr5	6959001	7670000	710999	68
Deletion	Chr11	8938431	8938443	12
Deletion	Chr4	9278146	9278148	2	OsKitaake04g048000
Deletion	Chr9	10429102	10429104	2	OsKitaake09g065100
Deletion	Chr4	17999098	17999100	2
Deletion	Chr3	20252898	20252899	1
Deletion	Chr5	21871001	21934000	62999	OsKitaake05g178800
Deletion	Chr1	21934218	21934236	18
Deletion	Chr11	22558762	22558764	2
Deletion	Chr8	22649762	22649764	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	5853946	6794753
Inversion	Chr6	22106018	22121526

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes