Search Kitaake

Mutant Information

Mutant Name	FN-379 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-379 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6607351 T-C Homo NON_SYNONYMOUS_CODING OsKitaake01g083100
SBS Chr1 10320611 T-C Hetero INTRON
SBS Chr1 14776445 T-C Hetero INTRON
SBS Chr1 19225027 C-T Hetero INTERGENIC
SBS Chr1 31851690 G-A Homo INTERGENIC
SBS Chr1 41816163 T-A Homo INTERGENIC
SBS Chr2 35456488 C-A Hetero INTERGENIC
SBS Chr3 20464984 C-T Homo INTERGENIC
SBS Chr3 30522397 C-A Homo INTERGENIC
SBS Chr3 36105257 A-T Homo INTERGENIC
SBS Chr4 27089267 C-T Hetero INTERGENIC
SBS Chr4 28149987 C-T Hetero INTERGENIC
SBS Chr4 30943766 G-T Homo INTERGENIC
SBS Chr4 30943767 C-T Homo INTERGENIC
SBS Chr4 33903413 G-T Homo INTERGENIC
SBS Chr6 5034146 A-T Hetero INTERGENIC
SBS Chr7 11003424 C-T Hetero INTERGENIC
SBS Chr7 11341646 C-G Hetero INTERGENIC
SBS Chr7 21365422 T-A Homo INTERGENIC
SBS Chr7 22864275 T-A Homo INTERGENIC
SBS Chr7 22864276 G-A Homo INTERGENIC
SBS Chr7 26229232 T-A Homo INTRON
SBS Chr7 27964390 T-C Homo INTRON
SBS Chr8 3591445 C-T Hetero INTERGENIC
SBS Chr8 3591446 C-A Hetero INTERGENIC
SBS Chr8 17908018 T-A Hetero INTERGENIC
SBS Chr8 26630693 T-G Hetero INTERGENIC
SBS Chr9 1088759 A-G Hetero INTERGENIC
SBS Chr9 4411877 T-C Hetero INTERGENIC
SBS Chr10 4741470 G-C Hetero INTERGENIC
SBS Chr12 5291988 C-A Hetero INTERGENIC
SBS Chr12 13281708 C-T Hetero INTERGENIC
SBS Chr12 17864075 G-A Homo INTERGENIC
SBS Chr12 22483704 C-T Hetero INTERGENIC
SBS Chr12 26609154 T-C Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 2078001 2238000 159999 20
Deletion Chr1 4451871 4451964 93
Deletion Chr12 5466540 5466551 11
Deletion Chr6 6466487 6466489 2
Deletion Chr4 9480408 9480580 172
Deletion Chr11 10145355 10145356 1
Deletion Chr1 22971557 22971558 1
Deletion Chr7 22994911 22994915 4
Deletion Chr2 28250001 28285000 34999 OsKitaake02g284900
Deletion Chr4 28263897 28263898 1
Deletion Chr3 34464846 34464855 9

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43877342 43877346 3
Insertion Chr5 821856 821859 2
Insertion Chr11 25299146 25299150 3
Insertion Chr7 12045873 12045875 1
Insertion Chr10 8707033 8707035 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 26116553 26358511 OsKitaake01g256600
Inversion Chr1 26116559 26358512 OsKitaake01g256600

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 2240923 Chr1 31800997 OsKitaake01g319600
Translocation Chr5 13985792 Chr1 31801203 2
Translocation Chr3 28577938 Chr1 30805316

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6607351	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g083100
SBS	Chr1	10320611	T-C	Hetero	INTRON
SBS	Chr1	14776445	T-C	Hetero	INTRON
SBS	Chr1	19225027	C-T	Hetero	INTERGENIC
SBS	Chr1	31851690	G-A	Homo	INTERGENIC
SBS	Chr1	41816163	T-A	Homo	INTERGENIC
SBS	Chr2	35456488	C-A	Hetero	INTERGENIC
SBS	Chr3	20464984	C-T	Homo	INTERGENIC
SBS	Chr3	30522397	C-A	Homo	INTERGENIC
SBS	Chr3	36105257	A-T	Homo	INTERGENIC
SBS	Chr4	27089267	C-T	Hetero	INTERGENIC
SBS	Chr4	28149987	C-T	Hetero	INTERGENIC
SBS	Chr4	30943766	G-T	Homo	INTERGENIC
SBS	Chr4	30943767	C-T	Homo	INTERGENIC
SBS	Chr4	33903413	G-T	Homo	INTERGENIC
SBS	Chr6	5034146	A-T	Hetero	INTERGENIC
SBS	Chr7	11003424	C-T	Hetero	INTERGENIC
SBS	Chr7	11341646	C-G	Hetero	INTERGENIC
SBS	Chr7	21365422	T-A	Homo	INTERGENIC
SBS	Chr7	22864275	T-A	Homo	INTERGENIC
SBS	Chr7	22864276	G-A	Homo	INTERGENIC
SBS	Chr7	26229232	T-A	Homo	INTRON
SBS	Chr7	27964390	T-C	Homo	INTRON
SBS	Chr8	3591445	C-T	Hetero	INTERGENIC
SBS	Chr8	3591446	C-A	Hetero	INTERGENIC
SBS	Chr8	17908018	T-A	Hetero	INTERGENIC
SBS	Chr8	26630693	T-G	Hetero	INTERGENIC
SBS	Chr9	1088759	A-G	Hetero	INTERGENIC
SBS	Chr9	4411877	T-C	Hetero	INTERGENIC
SBS	Chr10	4741470	G-C	Hetero	INTERGENIC
SBS	Chr12	5291988	C-A	Hetero	INTERGENIC
SBS	Chr12	13281708	C-T	Hetero	INTERGENIC
SBS	Chr12	17864075	G-A	Homo	INTERGENIC
SBS	Chr12	22483704	C-T	Hetero	INTERGENIC
SBS	Chr12	26609154	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	2078001	2238000	159999	20
Deletion	Chr1	4451871	4451964	93
Deletion	Chr12	5466540	5466551	11
Deletion	Chr6	6466487	6466489	2
Deletion	Chr4	9480408	9480580	172
Deletion	Chr11	10145355	10145356	1
Deletion	Chr1	22971557	22971558	1
Deletion	Chr7	22994911	22994915	4
Deletion	Chr2	28250001	28285000	34999	OsKitaake02g284900
Deletion	Chr4	28263897	28263898	1
Deletion	Chr3	34464846	34464855	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	26116553	26358511	OsKitaake01g256600
Inversion	Chr1	26116559	26358512	OsKitaake01g256600

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes