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Mutant Information

Mutant Name	FN-40 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-40 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8482299 T-C Hetero INTERGENIC
SBS Chr1 24650689 T-G Homo INTERGENIC
SBS Chr1 38684683 G-T Hetero INTERGENIC
SBS Chr3 5559226 C-A Homo SPLICE_SITE_REGION
SBS Chr3 28568547 A-C Hetero INTERGENIC
SBS Chr3 32443469 A-T Hetero UTR_3_PRIME
SBS Chr4 3568417 C-T Hetero INTERGENIC
SBS Chr5 4076612 T-A Homo INTERGENIC
SBS Chr5 9020466 C-T Homo INTERGENIC
SBS Chr5 30064660 G-T Hetero INTRON
SBS Chr5 30166877 T-A Hetero INTERGENIC
SBS Chr6 197853 G-A Hetero INTERGENIC
SBS Chr6 10725631 T-A Homo INTRON
SBS Chr6 20793114 T-C Hetero INTERGENIC
SBS Chr6 21390373 C-T Hetero INTERGENIC
SBS Chr6 26732066 C-G Hetero INTERGENIC
SBS Chr6 27469149 A-T Hetero INTERGENIC
SBS Chr7 3766961 G-A Hetero INTRON
SBS Chr7 3766962 T-A Hetero INTRON
SBS Chr7 20829055 G-A Hetero INTERGENIC
SBS Chr8 9755465 C-T Hetero INTERGENIC
SBS Chr8 22793311 C-T Hetero INTRON
SBS Chr9 2948826 G-A Homo INTERGENIC
SBS Chr9 10105856 G-T Hetero INTERGENIC
SBS Chr9 15725977 T-C Hetero INTERGENIC
SBS Chr10 11024241 A-C Homo INTERGENIC
SBS Chr10 17471297 A-C Homo INTRON
SBS Chr11 8769609 T-C Hetero INTERGENIC
SBS Chr11 12805902 C-T Homo INTERGENIC
SBS Chr11 15907521 A-C Homo INTRON
SBS Chr11 23653688 T-C Hetero INTRON
SBS Chr11 29587828 T-C Homo INTERGENIC
SBS Chr12 5004479 G-A Homo INTERGENIC
SBS Chr12 11134910 A-C Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 5832631 5832654 23
Deletion Chr6 10242391 10242393 2
Deletion Chr2 10424428 10424429 1
Deletion Chr8 10462622 10462623 1
Deletion Chr1 11352445 11352569 124
Deletion Chr6 13898080 13898262 182
Deletion Chr2 19038324 19038327 3
Deletion Chr3 20040046 20040356 310
Deletion Chr3 23772817 23772819 2
Deletion Chr1 25488145 25488146 1
Deletion Chr8 28266007 28266008 1
Deletion Chr2 32663360 32663362 2
Deletion Chr1 34207319 34207320 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 7280784 7280789 4
Insertion Chr1 32299490 32299493 2
Insertion Chr3 25442227 25442229 1 OsKitaake03g268500
Insertion Chr4 2728023 2728026 2
Insertion Chr4 18345247 18345250 2
Insertion Chr5 12965974 12965976 1 OsKitaake05g100400

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 881813 1644541
Inversion Chr8 899761 1639652

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 899762 Chr5 4076444
Translocation Chr8 899770 Chr7 2710817
Translocation Chr9 5662773 Chr7 2768626

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8482299	T-C	Hetero	INTERGENIC
SBS	Chr1	24650689	T-G	Homo	INTERGENIC
SBS	Chr1	38684683	G-T	Hetero	INTERGENIC
SBS	Chr3	5559226	C-A	Homo	SPLICE_SITE_REGION
SBS	Chr3	28568547	A-C	Hetero	INTERGENIC
SBS	Chr3	32443469	A-T	Hetero	UTR_3_PRIME
SBS	Chr4	3568417	C-T	Hetero	INTERGENIC
SBS	Chr5	4076612	T-A	Homo	INTERGENIC
SBS	Chr5	9020466	C-T	Homo	INTERGENIC
SBS	Chr5	30064660	G-T	Hetero	INTRON
SBS	Chr5	30166877	T-A	Hetero	INTERGENIC
SBS	Chr6	197853	G-A	Hetero	INTERGENIC
SBS	Chr6	10725631	T-A	Homo	INTRON
SBS	Chr6	20793114	T-C	Hetero	INTERGENIC
SBS	Chr6	21390373	C-T	Hetero	INTERGENIC
SBS	Chr6	26732066	C-G	Hetero	INTERGENIC
SBS	Chr6	27469149	A-T	Hetero	INTERGENIC
SBS	Chr7	3766961	G-A	Hetero	INTRON
SBS	Chr7	3766962	T-A	Hetero	INTRON
SBS	Chr7	20829055	G-A	Hetero	INTERGENIC
SBS	Chr8	9755465	C-T	Hetero	INTERGENIC
SBS	Chr8	22793311	C-T	Hetero	INTRON
SBS	Chr9	2948826	G-A	Homo	INTERGENIC
SBS	Chr9	10105856	G-T	Hetero	INTERGENIC
SBS	Chr9	15725977	T-C	Hetero	INTERGENIC
SBS	Chr10	11024241	A-C	Homo	INTERGENIC
SBS	Chr10	17471297	A-C	Homo	INTRON
SBS	Chr11	8769609	T-C	Hetero	INTERGENIC
SBS	Chr11	12805902	C-T	Homo	INTERGENIC
SBS	Chr11	15907521	A-C	Homo	INTRON
SBS	Chr11	23653688	T-C	Hetero	INTRON
SBS	Chr11	29587828	T-C	Homo	INTERGENIC
SBS	Chr12	5004479	G-A	Homo	INTERGENIC
SBS	Chr12	11134910	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	5832631	5832654	23
Deletion	Chr6	10242391	10242393	2
Deletion	Chr2	10424428	10424429	1
Deletion	Chr8	10462622	10462623	1
Deletion	Chr1	11352445	11352569	124
Deletion	Chr6	13898080	13898262	182
Deletion	Chr2	19038324	19038327	3
Deletion	Chr3	20040046	20040356	310
Deletion	Chr3	23772817	23772819	2
Deletion	Chr1	25488145	25488146	1
Deletion	Chr8	28266007	28266008	1
Deletion	Chr2	32663360	32663362	2
Deletion	Chr1	34207319	34207320	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	881813	1644541
Inversion	Chr8	899761	1639652

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes