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Mutant Information

Mutant Name	FN-6 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-6 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1321212 C-T Hetero INTERGENIC
SBS Chr1 5068136 T-C Homo INTERGENIC
SBS Chr1 12906645 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g154000
SBS Chr1 15191774 T-C Hetero INTRON
SBS Chr1 22453958 G-A Hetero INTERGENIC
SBS Chr1 22888067 A-G Hetero INTERGENIC
SBS Chr1 23105269 G-A Hetero INTERGENIC
SBS Chr1 29765450 C-T Hetero INTERGENIC
SBS Chr2 14114363 C-T Hetero INTERGENIC
SBS Chr2 16146995 G-A Hetero INTERGENIC
SBS Chr2 16933812 A-G Hetero INTERGENIC
SBS Chr2 21498174 G-A Homo INTERGENIC
SBS Chr2 26847258 T-C Homo INTERGENIC
SBS Chr2 35546818 C-T Hetero INTERGENIC
SBS Chr3 1630240 C-T Hetero INTERGENIC
SBS Chr3 21553048 C-A Hetero INTERGENIC
SBS Chr4 845232 G-A Hetero INTERGENIC
SBS Chr4 3362587 G-C Hetero INTERGENIC
SBS Chr4 21059671 C-T Hetero INTERGENIC
SBS Chr4 21360324 A-T Hetero INTERGENIC
SBS Chr4 30734492 G-A Hetero INTERGENIC
SBS Chr4 34617156 G-C Hetero INTERGENIC
SBS Chr6 2957350 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g040600
SBS Chr6 2957352 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 10041319 A-G Hetero INTERGENIC
SBS Chr6 10760174 C-T Hetero INTERGENIC
SBS Chr6 21489341 C-T Hetero INTERGENIC
SBS Chr7 19584734 A-G Homo INTERGENIC
SBS Chr8 2677686 T-G Hetero INTERGENIC
SBS Chr8 3740418 A-G Hetero INTERGENIC
SBS Chr8 7049824 A-T Hetero INTERGENIC
SBS Chr9 2922603 T-G Hetero INTERGENIC
SBS Chr9 8205868 G-A Hetero INTERGENIC
SBS Chr9 11936282 A-G Hetero INTERGENIC
SBS Chr9 16376178 T-C Hetero INTERGENIC
SBS Chr10 4703244 A-G Hetero INTERGENIC
SBS Chr10 15319176 A-G Hetero INTERGENIC
SBS Chr12 6820668 T-A Homo INTERGENIC
SBS Chr12 19964395 C-A Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 140482 140483 1
Deletion Chr11 1761867 1761869 2
Deletion Chr11 2375977 2375979 2
Deletion Chr12 7027917 7027918 1
Deletion Chr8 7504017 7504022 5
Deletion Chr9 12292683 12292695 12
Deletion Chr3 21434953 21434955 2
Deletion Chr2 23777472 23777663 191
Deletion Chr2 24033028 24033035 7
Deletion Chr1 36542001 36674000 131999 17
Deletion Chr3 36894138 36894148 10 OsKitaake03g412400

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 10143285 10143288 2
Insertion Chr12 22584039 22584042 2
Insertion Chr5 15447156 15447158 1
Insertion Chr7 11984659 11984661 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 27597333 28067186 OsKitaake03g290400
Inversion Chr3 27598327 28067196 OsKitaake03g290400

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 1100869 Chr3 27598326
Translocation Chr9 1100874 Chr3 27597337
Translocation Chr10 2871272 Chr1 16377942 OsKitaake01g175900
Translocation Chr10 2874691 Chr1 16378194 OsKitaake01g175900
Translocation Chr11 4971165 Chr10 8553783
Translocation Chr12 10975285 Chr1 17996300
Translocation Chr6 28686461 Chr1 16378171 2
Translocation Chr6 28686473 Chr1 16377942 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1321212	C-T	Hetero	INTERGENIC
SBS	Chr1	5068136	T-C	Homo	INTERGENIC
SBS	Chr1	12906645	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g154000
SBS	Chr1	15191774	T-C	Hetero	INTRON
SBS	Chr1	22453958	G-A	Hetero	INTERGENIC
SBS	Chr1	22888067	A-G	Hetero	INTERGENIC
SBS	Chr1	23105269	G-A	Hetero	INTERGENIC
SBS	Chr1	29765450	C-T	Hetero	INTERGENIC
SBS	Chr2	14114363	C-T	Hetero	INTERGENIC
SBS	Chr2	16146995	G-A	Hetero	INTERGENIC
SBS	Chr2	16933812	A-G	Hetero	INTERGENIC
SBS	Chr2	21498174	G-A	Homo	INTERGENIC
SBS	Chr2	26847258	T-C	Homo	INTERGENIC
SBS	Chr2	35546818	C-T	Hetero	INTERGENIC
SBS	Chr3	1630240	C-T	Hetero	INTERGENIC
SBS	Chr3	21553048	C-A	Hetero	INTERGENIC
SBS	Chr4	845232	G-A	Hetero	INTERGENIC
SBS	Chr4	3362587	G-C	Hetero	INTERGENIC
SBS	Chr4	21059671	C-T	Hetero	INTERGENIC
SBS	Chr4	21360324	A-T	Hetero	INTERGENIC
SBS	Chr4	30734492	G-A	Hetero	INTERGENIC
SBS	Chr4	34617156	G-C	Hetero	INTERGENIC
SBS	Chr6	2957350	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g040600
SBS	Chr6	2957352	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	10041319	A-G	Hetero	INTERGENIC
SBS	Chr6	10760174	C-T	Hetero	INTERGENIC
SBS	Chr6	21489341	C-T	Hetero	INTERGENIC
SBS	Chr7	19584734	A-G	Homo	INTERGENIC
SBS	Chr8	2677686	T-G	Hetero	INTERGENIC
SBS	Chr8	3740418	A-G	Hetero	INTERGENIC
SBS	Chr8	7049824	A-T	Hetero	INTERGENIC
SBS	Chr9	2922603	T-G	Hetero	INTERGENIC
SBS	Chr9	8205868	G-A	Hetero	INTERGENIC
SBS	Chr9	11936282	A-G	Hetero	INTERGENIC
SBS	Chr9	16376178	T-C	Hetero	INTERGENIC
SBS	Chr10	4703244	A-G	Hetero	INTERGENIC
SBS	Chr10	15319176	A-G	Hetero	INTERGENIC
SBS	Chr12	6820668	T-A	Homo	INTERGENIC
SBS	Chr12	19964395	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	140482	140483	1
Deletion	Chr11	1761867	1761869	2
Deletion	Chr11	2375977	2375979	2
Deletion	Chr12	7027917	7027918	1
Deletion	Chr8	7504017	7504022	5
Deletion	Chr9	12292683	12292695	12
Deletion	Chr3	21434953	21434955	2
Deletion	Chr2	23777472	23777663	191
Deletion	Chr2	24033028	24033035	7
Deletion	Chr1	36542001	36674000	131999	17
Deletion	Chr3	36894138	36894148	10	OsKitaake03g412400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	27597333	28067186	OsKitaake03g290400
Inversion	Chr3	27598327	28067196	OsKitaake03g290400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes