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Mutant Information

Mutant Name	FN-79 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-79 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 40732417 G-T Homo NON_SYNONYMOUS_CODING OsKitaake01g443200
SBS Chr2 11949702 A-C Hetero INTERGENIC
SBS Chr2 15889344 T-G Homo INTERGENIC
SBS Chr2 19780752 T-A Hetero INTERGENIC
SBS Chr2 29740038 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g300800
SBS Chr3 2358322 C-A Hetero INTERGENIC
SBS Chr3 15324116 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g198600
SBS Chr3 20000877 G-A Homo INTERGENIC
SBS Chr3 20745964 G-A Hetero INTERGENIC
SBS Chr3 25065704 C-T Homo INTERGENIC
SBS Chr3 28575789 G-A Homo INTERGENIC
SBS Chr4 7741456 C-T Homo INTRON
SBS Chr4 29965858 T-C Homo INTERGENIC
SBS Chr4 30115034 G-A Homo INTERGENIC
SBS Chr4 30115035 T-A Homo INTERGENIC
SBS Chr5 595311 G-C Homo INTERGENIC
SBS Chr6 28558612 T-G Hetero INTERGENIC
SBS Chr7 2276146 C-T Hetero INTERGENIC
SBS Chr7 23358715 T-G Hetero INTERGENIC
SBS Chr8 12900572 T-A Hetero INTERGENIC
SBS Chr8 17516930 C-G Hetero INTERGENIC
SBS Chr10 4303245 G-C Hetero INTERGENIC
SBS Chr10 4389005 T-C Hetero SYNONYMOUS_CODING
SBS Chr10 21384405 A-G Hetero INTERGENIC
SBS Chr11 10863057 T-C Hetero INTERGENIC
SBS Chr11 12714630 G-A Hetero INTERGENIC
SBS Chr11 17171378 C-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 85068 85076 8
Deletion Chr1 552135 552136 1
Deletion Chr12 842557 842559 2
Deletion Chr10 3567382 3567473 91
Deletion Chr3 5195722 5195723 1
Deletion Chr9 6618117 6618208 91
Deletion Chr7 7941766 7941768 2
Deletion Chr10 13436656 13436657 1
Deletion Chr11 15643001 15976000 332999 24
Deletion Chr10 18217001 18285000 67999 4
Deletion Chr11 20434001 20549000 114999 7
Deletion Chr4 25987160 25987161 1
Deletion Chr8 26148001 26236000 87999 16
Deletion Chr11 26677005 26677006 1 OsKitaake11g217300
Deletion Chr3 27376758 27376759 1 OsKitaake03g282400
Deletion Chr4 29417001 29695000 277999 37

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 28788571 28788574 2
Insertion Chr8 128027 128030 2
Insertion Chr8 27321247 27321250 2
Insertion Chr2 35354679 35354681 1

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 6398876 Chr7 11800381
Translocation Chr12 8785793 Chr4 25254133 OsKitaake04g170900
Translocation Chr12 8786143 Chr11 20432134 OsKitaake11g159900
Translocation Chr12 14400293 Chr6 23956874

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	40732417	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g443200
SBS	Chr2	11949702	A-C	Hetero	INTERGENIC
SBS	Chr2	15889344	T-G	Homo	INTERGENIC
SBS	Chr2	19780752	T-A	Hetero	INTERGENIC
SBS	Chr2	29740038	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g300800
SBS	Chr3	2358322	C-A	Hetero	INTERGENIC
SBS	Chr3	15324116	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g198600
SBS	Chr3	20000877	G-A	Homo	INTERGENIC
SBS	Chr3	20745964	G-A	Hetero	INTERGENIC
SBS	Chr3	25065704	C-T	Homo	INTERGENIC
SBS	Chr3	28575789	G-A	Homo	INTERGENIC
SBS	Chr4	7741456	C-T	Homo	INTRON
SBS	Chr4	29965858	T-C	Homo	INTERGENIC
SBS	Chr4	30115034	G-A	Homo	INTERGENIC
SBS	Chr4	30115035	T-A	Homo	INTERGENIC
SBS	Chr5	595311	G-C	Homo	INTERGENIC
SBS	Chr6	28558612	T-G	Hetero	INTERGENIC
SBS	Chr7	2276146	C-T	Hetero	INTERGENIC
SBS	Chr7	23358715	T-G	Hetero	INTERGENIC
SBS	Chr8	12900572	T-A	Hetero	INTERGENIC
SBS	Chr8	17516930	C-G	Hetero	INTERGENIC
SBS	Chr10	4303245	G-C	Hetero	INTERGENIC
SBS	Chr10	4389005	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr10	21384405	A-G	Hetero	INTERGENIC
SBS	Chr11	10863057	T-C	Hetero	INTERGENIC
SBS	Chr11	12714630	G-A	Hetero	INTERGENIC
SBS	Chr11	17171378	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	85068	85076	8
Deletion	Chr1	552135	552136	1
Deletion	Chr12	842557	842559	2
Deletion	Chr10	3567382	3567473	91
Deletion	Chr3	5195722	5195723	1
Deletion	Chr9	6618117	6618208	91
Deletion	Chr7	7941766	7941768	2
Deletion	Chr10	13436656	13436657	1
Deletion	Chr11	15643001	15976000	332999	24
Deletion	Chr10	18217001	18285000	67999	4
Deletion	Chr11	20434001	20549000	114999	7
Deletion	Chr4	25987160	25987161	1
Deletion	Chr8	26148001	26236000	87999	16
Deletion	Chr11	26677005	26677006	1	OsKitaake11g217300
Deletion	Chr3	27376758	27376759	1	OsKitaake03g282400
Deletion	Chr4	29417001	29695000	277999	37

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	6398876	Chr7	11800381
Translocation	Chr12	8785793	Chr4	25254133	OsKitaake04g170900
Translocation	Chr12	8786143	Chr11	20432134	OsKitaake11g159900
Translocation	Chr12	14400293	Chr6	23956874

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes