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Mutant Information

Mutant Name	FN-83 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-83 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 382432 G-A Hetero INTRON
SBS Chr1 33778648 T-A Hetero INTERGENIC
SBS Chr1 34307741 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g353400
SBS Chr1 35901895 C-A Hetero INTERGENIC
SBS Chr2 8170610 G-A Hetero UTR_5_PRIME
SBS Chr3 9008124 A-G Hetero INTERGENIC
SBS Chr3 9008346 T-C Hetero INTERGENIC
SBS Chr3 20522902 C-T Homo INTERGENIC
SBS Chr3 37588777 A-G Homo NON_SYNONYMOUS_CODING OsKitaake03g422100
SBS Chr4 11382927 C-T Homo INTERGENIC
SBS Chr4 13958080 A-C Homo INTERGENIC
SBS Chr4 22572249 A-G Homo UTR_3_PRIME
SBS Chr4 34016766 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g283900
SBS Chr5 28408270 A-G Hetero INTERGENIC
SBS Chr5 29421588 G-A Hetero UTR_3_PRIME
SBS Chr6 13294291 A-T Homo UTR_5_PRIME
SBS Chr6 15940686 T-C Homo INTERGENIC
SBS Chr6 19544219 C-T Hetero INTERGENIC
SBS Chr7 2583997 C-T Homo INTERGENIC
SBS Chr7 6407992 C-T Homo INTERGENIC
SBS Chr7 6407994 G-T Homo INTERGENIC
SBS Chr7 7560959 A-T Homo INTERGENIC
SBS Chr7 18580309 T-C Hetero INTERGENIC
SBS Chr8 13423892 G-A Homo INTERGENIC
SBS Chr8 16286506 G-A Hetero INTERGENIC
SBS Chr10 644758 G-A Hetero INTERGENIC
SBS Chr11 764880 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g009600
SBS Chr12 24891528 A-C Hetero INTERGENIC
SBS Chr12 25107487 G-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2463892 2463895 3
Deletion Chr9 4128001 4244000 115999 7
Deletion Chr7 6395297 6395298 1 OsKitaake07g074500
Deletion Chr5 6705453 6705461 8
Deletion Chr2 7604553 7604554 1
Deletion Chr7 12991964 12992031 67
Deletion Chr7 14162282 14162285 3
Deletion Chr9 16562324 16562325 1 OsKitaake09g121000
Deletion Chr9 19472131 19472137 6
Deletion Chr11 28744285 28744287 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43536310 43536313 2
Insertion Chr2 13550206 13550209 2
Insertion Chr6 18576279 18576282 2
Insertion Chr7 28701575 28701578 2
Insertion Chr3 19260759 19260763 3
Insertion Chr10 4060570 4060572 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 14841750 15149820 OsKitaake10g096000
Inversion Chr10 15339186 15378477 OsKitaake10g098400

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 15338670 Chr9 4130062 OsKitaake10g098100
Translocation Chr10 15378474 Chr9 4130061 OsKitaake10g098400
Translocation Chr9 18240961 Chr3 4963887 OsKitaake03g071500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	382432	G-A	Hetero	INTRON
SBS	Chr1	33778648	T-A	Hetero	INTERGENIC
SBS	Chr1	34307741	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g353400
SBS	Chr1	35901895	C-A	Hetero	INTERGENIC
SBS	Chr2	8170610	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	9008124	A-G	Hetero	INTERGENIC
SBS	Chr3	9008346	T-C	Hetero	INTERGENIC
SBS	Chr3	20522902	C-T	Homo	INTERGENIC
SBS	Chr3	37588777	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g422100
SBS	Chr4	11382927	C-T	Homo	INTERGENIC
SBS	Chr4	13958080	A-C	Homo	INTERGENIC
SBS	Chr4	22572249	A-G	Homo	UTR_3_PRIME
SBS	Chr4	34016766	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g283900
SBS	Chr5	28408270	A-G	Hetero	INTERGENIC
SBS	Chr5	29421588	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	13294291	A-T	Homo	UTR_5_PRIME
SBS	Chr6	15940686	T-C	Homo	INTERGENIC
SBS	Chr6	19544219	C-T	Hetero	INTERGENIC
SBS	Chr7	2583997	C-T	Homo	INTERGENIC
SBS	Chr7	6407992	C-T	Homo	INTERGENIC
SBS	Chr7	6407994	G-T	Homo	INTERGENIC
SBS	Chr7	7560959	A-T	Homo	INTERGENIC
SBS	Chr7	18580309	T-C	Hetero	INTERGENIC
SBS	Chr8	13423892	G-A	Homo	INTERGENIC
SBS	Chr8	16286506	G-A	Hetero	INTERGENIC
SBS	Chr10	644758	G-A	Hetero	INTERGENIC
SBS	Chr11	764880	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g009600
SBS	Chr12	24891528	A-C	Hetero	INTERGENIC
SBS	Chr12	25107487	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2463892	2463895	3
Deletion	Chr9	4128001	4244000	115999	7
Deletion	Chr7	6395297	6395298	1	OsKitaake07g074500
Deletion	Chr5	6705453	6705461	8
Deletion	Chr2	7604553	7604554	1
Deletion	Chr7	12991964	12992031	67
Deletion	Chr7	14162282	14162285	3
Deletion	Chr9	16562324	16562325	1	OsKitaake09g121000
Deletion	Chr9	19472131	19472137	6
Deletion	Chr11	28744285	28744287	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	14841750	15149820	OsKitaake10g096000
Inversion	Chr10	15339186	15378477	OsKitaake10g098400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes