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Mutant Information

Mutant Name	FN-95 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-95 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 25344667 T-G Hetero INTERGENIC
SBS Chr1 30131277 G-T Hetero INTERGENIC
SBS Chr2 1169365 C-A Homo NON_SYNONYMOUS_CODING OsKitaake02g017400
SBS Chr2 1169366 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g017400
SBS Chr2 1616923 A-T Homo INTERGENIC
SBS Chr2 17795983 G-A Hetero INTERGENIC
SBS Chr2 18024480 G-T Hetero INTERGENIC
SBS Chr2 24570270 C-T Hetero INTERGENIC
SBS Chr3 30898959 C-A Homo INTRON
SBS Chr3 30898960 T-A Homo INTRON
SBS Chr3 35736988 T-C Homo INTERGENIC
SBS Chr4 12906873 T-A Homo INTERGENIC
SBS Chr4 22184593 T-A Homo INTERGENIC
SBS Chr4 23273662 T-C Homo INTERGENIC
SBS Chr4 29522809 A-T Hetero INTRON
SBS Chr4 30792020 T-G Hetero INTRON
SBS Chr5 16465751 C-T Hetero INTERGENIC
SBS Chr5 19008743 A-G Hetero INTERGENIC
SBS Chr6 13658022 G-A Homo INTERGENIC
SBS Chr7 9876553 A-G Hetero INTERGENIC
SBS Chr7 14696225 A-G Hetero INTRON
SBS Chr7 17169528 T-C Homo INTRON
SBS Chr8 10268363 T-A Homo INTERGENIC
SBS Chr8 15614181 G-T Hetero INTERGENIC
SBS Chr9 17506927 C-T Hetero STOP_GAINED OsKitaake09g131901
SBS Chr10 1688696 C-T Homo INTERGENIC
SBS Chr10 10398491 G-A Hetero INTERGENIC
SBS Chr10 10398492 G-A Hetero INTERGENIC
SBS Chr10 11761314 C-T Hetero INTERGENIC
SBS Chr11 14904023 A-G Hetero INTERGENIC
SBS Chr11 15405432 T-C Homo INTERGENIC
SBS Chr11 29512905 T-A Homo INTRON
SBS Chr12 3800010 C-A Hetero INTERGENIC
SBS Chr12 5474523 T-A Homo INTRON

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 2007193 2007194 1
Deletion Chr9 2373001 2425000 51999 3
Deletion Chr9 2429329 2429331 2
Deletion Chr12 8470001 8721000 250999 5
Deletion Chr12 10681517 10681518 1
Deletion Chr7 16356812 16356822 10
Deletion Chr5 16839852 16839853 1
Deletion Chr5 16936846 16936852 6
Deletion Chr2 17105626 17105736 110
Deletion Chr7 17501331 17501408 77
Deletion Chr10 21043001 21117000 73999 10
Deletion Chr1 23768001 24360000 591999 67
Deletion Chr1 26680992 26680994 2
Deletion Chr3 29973534 29973552 18
Deletion Chr5 30165667 30165668 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 8382779 8382782 2
Insertion Chr8 11785930 11785932 1
Insertion Chr9 9276640 9276643 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 2472499 2507239
Inversion Chr3 28513475 29198162
Inversion Chr3 28513483 29198163

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 2507209 Chr6 26397515 OsKitaake06g236900
Translocation Chr12 9542555 Chr7 17077532 OsKitaake07g139300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25344667	T-G	Hetero	INTERGENIC
SBS	Chr1	30131277	G-T	Hetero	INTERGENIC
SBS	Chr2	1169365	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g017400
SBS	Chr2	1169366	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g017400
SBS	Chr2	1616923	A-T	Homo	INTERGENIC
SBS	Chr2	17795983	G-A	Hetero	INTERGENIC
SBS	Chr2	18024480	G-T	Hetero	INTERGENIC
SBS	Chr2	24570270	C-T	Hetero	INTERGENIC
SBS	Chr3	30898959	C-A	Homo	INTRON
SBS	Chr3	30898960	T-A	Homo	INTRON
SBS	Chr3	35736988	T-C	Homo	INTERGENIC
SBS	Chr4	12906873	T-A	Homo	INTERGENIC
SBS	Chr4	22184593	T-A	Homo	INTERGENIC
SBS	Chr4	23273662	T-C	Homo	INTERGENIC
SBS	Chr4	29522809	A-T	Hetero	INTRON
SBS	Chr4	30792020	T-G	Hetero	INTRON
SBS	Chr5	16465751	C-T	Hetero	INTERGENIC
SBS	Chr5	19008743	A-G	Hetero	INTERGENIC
SBS	Chr6	13658022	G-A	Homo	INTERGENIC
SBS	Chr7	9876553	A-G	Hetero	INTERGENIC
SBS	Chr7	14696225	A-G	Hetero	INTRON
SBS	Chr7	17169528	T-C	Homo	INTRON
SBS	Chr8	10268363	T-A	Homo	INTERGENIC
SBS	Chr8	15614181	G-T	Hetero	INTERGENIC
SBS	Chr9	17506927	C-T	Hetero	STOP_GAINED	OsKitaake09g131901
SBS	Chr10	1688696	C-T	Homo	INTERGENIC
SBS	Chr10	10398491	G-A	Hetero	INTERGENIC
SBS	Chr10	10398492	G-A	Hetero	INTERGENIC
SBS	Chr10	11761314	C-T	Hetero	INTERGENIC
SBS	Chr11	14904023	A-G	Hetero	INTERGENIC
SBS	Chr11	15405432	T-C	Homo	INTERGENIC
SBS	Chr11	29512905	T-A	Homo	INTRON
SBS	Chr12	3800010	C-A	Hetero	INTERGENIC
SBS	Chr12	5474523	T-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	2007193	2007194	1
Deletion	Chr9	2373001	2425000	51999	3
Deletion	Chr9	2429329	2429331	2
Deletion	Chr12	8470001	8721000	250999	5
Deletion	Chr12	10681517	10681518	1
Deletion	Chr7	16356812	16356822	10
Deletion	Chr5	16839852	16839853	1
Deletion	Chr5	16936846	16936852	6
Deletion	Chr2	17105626	17105736	110
Deletion	Chr7	17501331	17501408	77
Deletion	Chr10	21043001	21117000	73999	10
Deletion	Chr1	23768001	24360000	591999	67
Deletion	Chr1	26680992	26680994	2
Deletion	Chr3	29973534	29973552	18
Deletion	Chr5	30165667	30165668	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	2472499	2507239
Inversion	Chr3	28513475	29198162
Inversion	Chr3	28513483	29198163

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes