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Mutant Information

Mutant Name	FN-97 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-97 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3535926 G-A Homo INTERGENIC
SBS Chr1 19904573 G-A Hetero INTERGENIC
SBS Chr1 28411059 C-T Hetero INTERGENIC
SBS Chr2 3168200 G-T Homo INTERGENIC
SBS Chr2 12828140 C-T Homo UTR_5_PRIME
SBS Chr2 25088206 A-T Hetero INTERGENIC
SBS Chr2 34943652 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g364600
SBS Chr3 13394843 A-T Homo INTERGENIC
SBS Chr3 13394844 C-T Homo INTERGENIC
SBS Chr3 18746882 T-A Homo INTERGENIC
SBS Chr3 19907290 A-T Homo INTERGENIC
SBS Chr3 19907291 A-T Homo INTERGENIC
SBS Chr4 18082532 C-A Hetero INTERGENIC
SBS Chr6 10074111 T-A Hetero INTERGENIC
SBS Chr6 18345815 T-C Hetero INTERGENIC
SBS Chr6 20806594 G-A Hetero INTERGENIC
SBS Chr7 22283785 C-A Hetero INTERGENIC
SBS Chr8 9869183 C-A Hetero INTRON
SBS Chr8 13182595 G-T Hetero INTERGENIC
SBS Chr8 21933170 C-G Hetero INTERGENIC
SBS Chr9 8371403 T-C Hetero INTERGENIC
SBS Chr9 11154705 C-T Homo INTERGENIC
SBS Chr10 90981 G-A Hetero INTERGENIC
SBS Chr11 7779505 T-G Hetero INTRON
SBS Chr12 25705027 T-G Homo UTR_3_PRIME

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1454778 1454780 2
Deletion Chr2 1464873 1464874 1
Deletion Chr9 2322917 2322918 1
Deletion Chr3 5070714 5070716 2
Deletion Chr3 8152249 8152340 91
Deletion Chr5 8625848 8625854 6
Deletion Chr2 9006165 9006167 2
Deletion Chr9 9971920 9971932 12
Deletion Chr6 10204406 10204531 125
Deletion Chr3 10692659 10692663 4
Deletion Chr9 11947074 11947077 3
Deletion Chr2 13531953 13531958 5
Deletion Chr9 19998061 19998062 1
Deletion Chr3 20337876 20337877 1
Deletion Chr3 20727803 20727805 2
Deletion Chr12 20756315 20756316 1 OsKitaake12g162200
Deletion Chr1 26693454 26693455 1
Deletion Chr11 28982396 28982397 1
Deletion Chr11 29255869 29255873 4
Deletion Chr5 29525558 29525560 2 OsKitaake05g280600
Deletion Chr6 30428173 30428174 1 OsKitaake06g286000
Deletion Chr3 35615593 35615595 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 1370869 1370872 2
Insertion Chr1 24396360 24396363 2
Insertion Chr3 19362193 19362195 1
Insertion Chr8 12905213 12905215 1
Insertion Chr12 16545651 16545655 3

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 20730107 20738041 OsKitaake03g231900

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 857320 Chr6 26203607 OsKitaake07g010700
Translocation Chr7 857336 Chr6 26202127 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3535926	G-A	Homo	INTERGENIC
SBS	Chr1	19904573	G-A	Hetero	INTERGENIC
SBS	Chr1	28411059	C-T	Hetero	INTERGENIC
SBS	Chr2	3168200	G-T	Homo	INTERGENIC
SBS	Chr2	12828140	C-T	Homo	UTR_5_PRIME
SBS	Chr2	25088206	A-T	Hetero	INTERGENIC
SBS	Chr2	34943652	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g364600
SBS	Chr3	13394843	A-T	Homo	INTERGENIC
SBS	Chr3	13394844	C-T	Homo	INTERGENIC
SBS	Chr3	18746882	T-A	Homo	INTERGENIC
SBS	Chr3	19907290	A-T	Homo	INTERGENIC
SBS	Chr3	19907291	A-T	Homo	INTERGENIC
SBS	Chr4	18082532	C-A	Hetero	INTERGENIC
SBS	Chr6	10074111	T-A	Hetero	INTERGENIC
SBS	Chr6	18345815	T-C	Hetero	INTERGENIC
SBS	Chr6	20806594	G-A	Hetero	INTERGENIC
SBS	Chr7	22283785	C-A	Hetero	INTERGENIC
SBS	Chr8	9869183	C-A	Hetero	INTRON
SBS	Chr8	13182595	G-T	Hetero	INTERGENIC
SBS	Chr8	21933170	C-G	Hetero	INTERGENIC
SBS	Chr9	8371403	T-C	Hetero	INTERGENIC
SBS	Chr9	11154705	C-T	Homo	INTERGENIC
SBS	Chr10	90981	G-A	Hetero	INTERGENIC
SBS	Chr11	7779505	T-G	Hetero	INTRON
SBS	Chr12	25705027	T-G	Homo	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1454778	1454780	2
Deletion	Chr2	1464873	1464874	1
Deletion	Chr9	2322917	2322918	1
Deletion	Chr3	5070714	5070716	2
Deletion	Chr3	8152249	8152340	91
Deletion	Chr5	8625848	8625854	6
Deletion	Chr2	9006165	9006167	2
Deletion	Chr9	9971920	9971932	12
Deletion	Chr6	10204406	10204531	125
Deletion	Chr3	10692659	10692663	4
Deletion	Chr9	11947074	11947077	3
Deletion	Chr2	13531953	13531958	5
Deletion	Chr9	19998061	19998062	1
Deletion	Chr3	20337876	20337877	1
Deletion	Chr3	20727803	20727805	2
Deletion	Chr12	20756315	20756316	1	OsKitaake12g162200
Deletion	Chr1	26693454	26693455	1
Deletion	Chr11	28982396	28982397	1
Deletion	Chr11	29255869	29255873	4
Deletion	Chr5	29525558	29525560	2	OsKitaake05g280600
Deletion	Chr6	30428173	30428174	1	OsKitaake06g286000
Deletion	Chr3	35615593	35615595	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	20730107	20738041	OsKitaake03g231900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes